Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq4220 95.1 2e-14 seq35 95.1 2e-14 seq6042 84.2 3e-11 >seq4220 Length=46393 Score = 95.1 bits (104), Expect = 2e-14 Identities = 213/320 (67%), Gaps = 0/320 (0%) Strand=Plus/Plus Query 13692 GAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATCGAGATGTTCGAGCGCCTC 13751 || || ||||| || ||||| || |||||||| | |||||||||||||| || | ||| Sbjct 38065 GATTTCCCCATTGCTTACTCCATGGTGATCCATGAGAAGATCGAGATGTTTGAAAGGCTC 38124 Query 13752 CTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCCAAGTCCGGC 13811 ||||| ||||| ||| | || || || | ||||| || ||||||||| ||||| Sbjct 38125 CTGAGAGCCATTTACACTCCTCACAATGTGTACTGTGTTCACGTGGACCAGAAGTCTCCT 38184 Query 13812 GACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGCTTCCCTAACGTGGCCCTGGCC 13871 || || | | | || ||||| || ||| | | |||||| ||||| Sbjct 38185 GAGATCTTTAAACAAGCAGTAAGAGCCATTGCGTCCTGCCTGACCAACGTGTTTGTGGCC 38244 Query 13872 CACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCAGGCCGACCTCAGCTGC 13931 | || | ||| | |||| ||||||| ||| || || || ||| ||| |||| Sbjct 38245 AGCAAAATGGAGAGTGTGATTTACGCCTCCTGGTCTCGAGTTCAAGCAGACATCAACTGC 38304 Query 13932 ATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCTCAACCTGTGCGGGATG 13991 ||| || ||| | || || ||| |||||| ||| ||||||||| || || | Sbjct 38305 ATGCAAGATCTGCTCAAGTCACCTGTCCAGTGGAAGTATCTGCTCAACACCTGTGGTACT 38364 Query 13992 GACTTCCCGCTCAAGACCAA 14011 || ||||| | || ||||| Sbjct 38365 GATTTCCCCATTAAAACCAA 38384 Score = 89.7 bits (98), Expect = 7e-13 Identities = 214/321 (67%), Gaps = 2/321 (1%) Strand=Plus/Plus Query 13692 GAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATCGAGATGTTCGAGCGCCTC 13751 || || ||||| || ||||| || |||||||| | |||||||||||||| || | ||| Sbjct 19930 GATTTCCCCATTGCTTACTCCATGGTGATCCATGAGAAGATCGAGATGTTTGAAAGGCTC 19989 Query 13752 CTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCCAAGTCCGGC 13811 ||||| ||||| ||| | || || || | ||||| || ||||||||| ||||| Sbjct 19990 CTGAGAGCCATTTACACTCCTCACAATGTGTACTGTGTTCACGTGGACCAGAAGTCTCCT 20049 Query 13812 GACGAGTTCATCCGGGGCGTCTCG-GCCATCGCCAGGTGCTTCCCTAACGTGGCCCTGGC 13870 || || | | || | | ||||| || ||| | | |||||| |||| Sbjct 20050 GA-GATCTTTAAAGAAGCAGCAAGAGCCATTGCGTCCTGCCTGACCAACGTGTTTGTGGC 20108 Query 13871 CCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCAGGCCGACCTCAGCTG 13930 | | || | ||| | |||| ||||||| ||| || || || ||| ||| ||| Sbjct 20109 CAGCAAAATGGAGAGTGTGATTTACGCCTCCTGGTCTCGAGTTCAAGCAGACATCAACTG 20168 Query 13931 CATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCTCAACCTGTGCGGGAT 13990 |||| || ||| | || || ||| |||||| ||| ||||||||| || || | Sbjct 20169 CATGCAAGATCTGCTCAAGTCACCTGTCCAGTGGAAGTATCTGCTCAACACCTGTGGTAC 20228 Query 13991 GGACTTCCCGCTCAAGACCAA 14011 || ||||| | || ||||| Sbjct 20229 TGATTTCCCCATTAAAACCAA 20249 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 13692 GAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATCGAGATGTTCGAGCGCCTC 13751 || || ||||| || ||||| || |||||||| | |||||||||||||| || | ||| Sbjct 37850 GATTTCCCCATTGCTTACTCCATGGTGATCCATGAGAAGATCGAGATGTTTGAAAGGCTC 37909 Query 13752 CTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCCAAGTC 13807 ||||| ||||| ||| | || || || | ||||| || ||||||||| ||||| Sbjct 37910 CTGAGAGCCATTTACACTCCTCACAATGTGTACTGTGTTCACGTGGACCAGAAGTC 37965 >seq35 Length=29126390 Score = 95.1 bits (104), Expect = 2e-14 Identities = 213/320 (67%), Gaps = 0/320 (0%) Strand=Plus/Minus Query 13692 GAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATCGAGATGTTCGAGCGCCTC 13751 || || ||||| || ||||| || |||||||| | |||||||||||||| || | ||| Sbjct 5596245 GATTTCCCCATTGCTTACTCCATGGTGATCCATGAGAAGATCGAGATGTTTGAAAGGCTC 5596186 Query 13752 CTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCCAAGTCCGGC 13811 ||||| ||||| ||| | || || || | ||||| || ||||||||| ||||| Sbjct 5596185 CTGAGAGCCATTTACACTCCTCACAATGTGTACTGTGTTCACGTGGACCAGAAGTCTCCT 5596126 Query 13812 GACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGCTTCCCTAACGTGGCCCTGGCC 13871 || || | | | || ||||| || ||| | | |||||| ||||| Sbjct 5596125 GAGATCTTTAAACAAGCAGTAAGAGCCATTGCGTCCTGCCTGACCAACGTGTTTGTGGCC 5596066 Query 13872 CACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCAGGCCGACCTCAGCTGC 13931 | || | ||| | |||| ||||||| ||| || || || ||| ||| |||| Sbjct 5596065 AGCAAAATGGAGAGTGTGATTTACGCCTCCTGGTCTCGAGTTCAAGCAGACATCAACTGC 5596006 Query 13932 ATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCTCAACCTGTGCGGGATG 13991 ||| || ||| | || || ||| |||||| ||| ||||||||| || || | Sbjct 5596005 ATGCAAGATCTGCTCAAGTCACCTGTCCAGTGGAAGTATCTGCTCAACACCTGTGGTACT 5595946 Query 13992 GACTTCCCGCTCAAGACCAA 14011 || ||||| | || ||||| Sbjct 5595945 GATTTCCCCATTAAAACCAA 5595926 >seq6042 Length=214888 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 13692 GAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATCGAGATGTTCGAGCGCCTC 13751 || || ||||| || ||||| || ||||| || | |||||||||||||| || | ||| Sbjct 31304 GATTTCCCCATTGCTTACTCCATGGTGATACATGAGAAGATCGAGATGTTTGAAAGGCTC 31363 Query 13752 CTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCCAAGTC 13807 ||||| ||||| ||| | || || || | ||||| || ||||||||| ||||| Sbjct 31364 CTGAGAGCCATTTACACTCCTCACAATGTGTACTGTGTTCACGTGGACCAGAAGTC 31419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658661979297280