Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq14 122 7e-23 seq22 86.0 5e-12 >seq14 Length=18393167 Score = 122 bits (134), Expect = 7e-23 Identities = 130/169 (77%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 |||||| |||| || ||||| || ||||||||||| || || ||||| || ||||| || Sbjct 18375993 CATGTCTTTGTATTCAGCTCCAAAGTGCCTCCACTGAAAGCCATACACGGGACCCAGATC 18375934 Query 30283 TCCCTCTTCCCTGT-GCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30341 ||| || || | | ||| ||||| ||||| |||| ||| || ||||| ||||| || | Sbjct 18375933 TCCTTCCTCACGATCGCT-AAAGCCGCTCTTATCCAGAAACTCCCTGGAGCCGTTAGCAT 18375875 Query 30342 CCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 |||||||| | || |||||||| || |||||| ||| || || || || Sbjct 18375874 CCCAGATCCTCACACCCTTCTCGGACAGCTCTCTGGCATTGGTTGAACC 18375826 >seq22 Length=8395091 Score = 86.0 bits (94), Expect = 5e-12 Identities = 129/177 (73%), Gaps = 11/177 (6%) Strand=Plus/Plus Query 30224 ATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCT 30283 ||||| |||| || ||||| || ||||||||||| || || ||||| || ||||| ||| Sbjct 3279590 ATGTCTTTGTATTCAGCTCCAAAGTGCCTCCACTGAAAGCCATACACGGGACCCAGATCT 3279649 Query 30284 CCCTCTTCCCTGT-GCTCGAAGCCCCTCTT-GTC-----CAAAAAGTCTCTGGAACCGTT 30336 || || || | | ||| |||| ||||| ||| | ||| || ||||| || || Sbjct 3279650 CCTTCCTCTCGATCGCT-ATAGCCTCTCTTAGTCTCTTATAGAAACTCCCTGGAGCCATT 3279708 Query 30337 GGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTG--TGGACCCT 30391 || ||||||||| | || | |||||| || |||||| || ||||| || ||||| Sbjct 3279709 AGCATCCCAGATCCTCACACTCTTCTCGGACAGCTCTCAGG-GTTTGGTTGAACCCT 3279764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406263961006776