Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq6039 107 2e-18 seq48 96.9 3e-15 >seq6039 Length=1663683 Score = 107 bits (118), Expect = 2e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 3250 TGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAGTTTGG 3309 ||| ||||||||| |||| || || ||||||||||| || || ||||||||||||||||| Sbjct 853161 TGAAGAGCTCTTCAGAGACGGAGTGAACTGGGGGCGGATCGTCGCTTTCTTTGAGTTTGG 853102 Query 3310 TGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAACATTGC 3369 ||| ||||||||||| ||| |||| | | || | |||| || || || ||||| Sbjct 853101 TGGGACCATGTGTGTGGAGAGCTTCAACCGGGAGATGGCGTCCCAGGTAGATAATATTGC 853042 Query 3370 CGCGTGGATGACAGACCAGCTG 3391 |||||||||||| | ||| Sbjct 853041 ACACTGGATGACAGACTACCTG 853020 >seq48 Length=22470700 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 3251 GATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAGTTTGGT 3310 || |||||||| ||| || || ||||||||||| || | |||||||||||||||||| Sbjct 8111286 GAAGAGCTCTTTAAAGACGGAGTGAACTGGGGGCGGATCATCGCTTTCTTTGAGTTTGGT 8111227 Query 3311 GGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAACATTGCC 3370 || ||||||||||| |||||||| | | || | |||| || || || ||||| Sbjct 8111226 GGGACCATGTGTGTGGAGAGCGTCAACCGGGAGATGGCGTCCCAGGTAGATAATATTGCA 8111167 Query 3371 GCGTGGATGACAGACCAGCTG 3391 |||||||||||| | ||| Sbjct 8111166 CACTGGATGACAGACTACCTG 8111146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414429427633192