Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq10 141 2e-28 >seq10 Length=22665327 Score = 141 bits (156), Expect = 2e-28 Identities = 157/203 (77%), Gaps = 11/203 (5%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 |||||||| || |||||||| || || | || || | |||||||||||||| ||||| Sbjct 4886425 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGTGTGCGACCATCTTCCAGCTGTTTGCCA 4886366 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGT-CCTGGATCTTTTGT-- 211034 || ||||| || | || |||||||| |||| |||||||| | |||||| |||||| Sbjct 4886365 GCAAAGATCAGCCTCTGCTGGTCAGG-GGAATGCCTTCCTTTTGTCTGGAT-TTTTGTCC 4886308 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || ||||| || ||||||||| ||| |||||||| |||||||| ||||| || ||| Sbjct 4886307 TTGACGTTCTCAATGGTGTCA---CTTGGCTCAACCTCAAGAGTGATGGTCTTGCCAGTG 4886251 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 || || || ||||| | |||||| Sbjct 4886250 AGGGTTTTGACAAAGATCTGCAT 4886228 Score = 86.0 bits (94), Expect = 1e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 211008 ACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACC 211067 || || ||||||||||||||||| ||||| || ||||||||||| | || ||| Sbjct 4903306 ACACCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCGCTGGGCTCGACC 4903247 Query 211068 TCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| ||||| ||||| || || ||||| || ||||| | |||||| || Sbjct 4903246 TCGAGGGTGATGGTCTTACCGGTCAGAGTTTTCACAAAGATCTGCATCTT 4903197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159012721366970