Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq10 87.8 2e-12 >seq10 Length=22665327 Score = 87.8 bits (96), Expect = 2e-12 Identities = 164/237 (69%), Gaps = 7/237 (3%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| || | || | ||||| ||| | ||| ||| || || || || || || Sbjct 4886459 CATGCCTCCCCTGAGACGCAGCACCAGATGCAAGGTGGACTCCTTCTGGATGTTGTAGTC 4886400 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 | ||||| || | || || ||||||||||| ||||| || || | ||||||||| | Sbjct 4886399 AGACAGTGTGCGACCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAG- 4886341 Query 39174 GGGCACGC--TCTCTTTGTCCATGATTTTCTGT--TTGAGCGTCGCCACCGTATCGCTCG 39229 ||| | || || |||||| || ||| ||| |||| || | | || || || | Sbjct 4886340 GGGAATGCCTTCCTTTTGTC--TGGATTTTTGTCCTTGACGTTCTCAATGGTGTCACTTG 4886283 Query 39230 ACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 ||| || || | ||||| | || || || || ||||| |||||||| ||||||| Sbjct 4886282 GCTCAACCTCAAGAGTGATGGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCATCT 4886226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429496505354114