Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq10 104 2e-17 >seq10 Length=22665327 Score = 104 bits (114), Expect = 2e-17 Identities = 148/206 (72%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||||||||| || || || |||||||| || ||||| | | Sbjct 4886228 ATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACCATCACTCTTGAGGTTGAGCCAAGT 4886287 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAA--GAAGGTGTACCGCCAGATC 23728 ||||| |||| | | || | |||| | | |||||| ||||| | || || || | Sbjct 4886288 GACACCATTGAGAACGTCAAGGACAAAAATCCAGACAAAAGGAAGGCATTCC-CCTGACC 4886346 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | | || ||||| |||||||| |||||||| | ||||| | || |||| Sbjct 4886347 AGCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGTCGCACACTGTCTGACTACA 4886406 Query 23789 ACATACAAAAAGAGTCCACATTACAT 23814 |||| || || |||||||| || ||| Sbjct 4886407 ACATCCAGAAGGAGTCCACCTTGCAT 4886432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337970967404024