Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq39 104 2e-17 seq24 102 7e-17 seq40 98.7 8e-16 >seq39 Length=16255708 Score = 104 bits (114), Expect = 2e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || |||||||| || ||||| || || || || | ||| ||||| | |||||||| || Sbjct 10356360 TCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCTTT 10356419 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| || |||| ||||| |||||||||||||| || |||||||| || ||||| || Sbjct 10356420 AGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCTACAGCAGCAAAAGCC 10356479 Query 4692 AC 4693 || Sbjct 10356480 AC 10356481 Score = 82.4 bits (90), Expect = 7e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868 || |||| || || ||||| || | || || ||||||||||| ||||| ||||| || Sbjct 10356911 GGATCTTTGATGTAGGTGTCAATCAACAGACTGTACATTTCAGAGTGTATGTTTTCCATG 10356970 Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 |||||||| || ||||| ||||| | ||||| || ||||| || || | | ||||| Sbjct 10356971 GCAATCTGGAAACCGTAGAAGCAACGGGCTTCAGTCACTTGGACCTCCTGAGTAAATC 10357028 >seq24 Length=12449181 Score = 102 bits (112), Expect = 7e-17 Identities = 103/133 (77%), Gaps = 1/133 (1%) Strand=Plus/Plus Query 4567 AACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCT 4626 ||||| | |||||||| || ||||| || || | || | ||||||||| | ||||| | Sbjct 10123635 AACCT-CATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTT 10123693 Query 4627 TTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAA 4686 | || | ||| | || || |||||||| ||||| ||||| |||||||| || || |||| Sbjct 10123694 TCTTCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAA 10123753 Query 4687 ACGCTACTAATCG 4699 | ||||||||||| Sbjct 10123754 ATGCTACTAATCG 10123766 >seq40 Length=23490330 Score = 98.7 bits (108), Expect = 8e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || |||||||| || ||||| || || || || | ||| ||||| | |||||||| || Sbjct 14323893 TCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCCGGCATGAGTCCTCTCTTCTTT 14323952 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| || |||| ||||| |||||||||||||| || ||||| || || ||||| || Sbjct 14323953 AGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAGCC 14324012 Query 4692 AC 4693 || Sbjct 14324013 AC 14324014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427000790632874