Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq230 102 1e-16 seq39 89.7 7e-13 seq40 87.8 2e-12 seq24 86.0 9e-12 >seq230 Length=1256464 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| || ||||| |||||||| ||||||||| ||| | || || || || || || | Sbjct 1149257 TCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCGATGTGGATGT 1149198 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 | | ||||| || || || ||||| |||||||| || || ||||| |||| ||||||| Sbjct 1149197 TGAGGGACTGGCTCTGGTCAATGAAGGCTCCTCTGTCTGCAGCCATCTTTAAGATGGTCT 1149138 Query 76969 TTTGAGGAATTTCCCA 76984 |||||| || ||||| Sbjct 1149137 TTTGAGAGATCTCCCA 1149122 Score = 95.1 bits (104), Expect = 2e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||| ||||| |||| ||||| || ||||| || || || || ||||| || | || Sbjct 1148784 TGAAACTCTCCGGACAGAACTCTGCGTGTGTAGATGTTGCTAGTGTATGGCTCGATTGAC 1148725 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCA 77238 ||||||||||||| || |||||||| || ||||| |||||||| |||| || Sbjct 1148724 TCATTGTTTCCCAGGATCTGAGCAGTGGAGGCAGTGGGCATAGGAGCCAGCA 1148673 >seq39 Length=16255708 Score = 89.7 bits (98), Expect = 7e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| || || | ||| || || || ||||| || ||||| ||||| | || || Sbjct 10356360 TCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCTTT 10356419 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||| || || | || ||||| ||||||||||| || |||||||| || ||||| || Sbjct 10356420 AGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCTACAGCAGCAAAAGC 10356478 >seq40 Length=23490330 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 48393 TCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTT 48452 || ||| |||||| | |||||| || || || ||||| |||||||||||||| || ||| Sbjct 14324440 TCTTTGGGATCTTTGATGTAAGTGTCAATCAACAGACTGTACATTTCGGAGTGGATGTTT 14324499 Query 48453 TCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAA 48512 || || || ||||| |||||||| || || | ||||| || | || || ||| | | Sbjct 14324500 TCCATGGCAATCTGGAATCCGTAGAAGCAACGGGCTTCAGTTACTTGGACTTCCTGAGTA 14324559 Query 48513 AATCGTTC 48520 ||||| || Sbjct 14324560 AATCGCTC 14324567 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| || || | ||| || || || ||||| || ||||| ||||| | || || Sbjct 14323893 TCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCCGGCATGAGTCCTCTCTTCTTT 14323952 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||| || || | || ||||| ||||||||||| || ||||| || || ||||| || Sbjct 14323953 AGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAGC 14324011 >seq24 Length=12449181 Score = 86.0 bits (94), Expect = 9e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 48639 ACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTG 48698 || || ||| ||||||| ||||| |||| |||| ||| ||||| ||||| || ||| Sbjct 10126978 ACCTCCTCAACTGTCCAGAATGAGGCCTGAGCTTGTTTGTACATTTTCCAGATGTCAGGA 10127037 Query 48699 TATTGGATTGGGAAAATAACAAATCTATTTGGATTTT 48735 || |||||||||||||| ||||||| ||||| |||| Sbjct 10127038 TACTGGATTGGGAAAATGACAAATCGCTTTGGGTTTT 10127074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694587367449920