Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq39 111 2e-19 seq40 102 1e-16 seq230 96.9 5e-15 seq24 89.7 7e-13 >seq39 Length=16255708 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| || || | ||| || || || ||||| |||||||| ||||| | ||| || Sbjct 10356360 TCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCTTT 10356419 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| || |||| || ||||| ||||||||||| || ||||||||||| || || || Sbjct 10356420 AGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCTACAGCAGCAAAAGCC 10356479 Query 46774 ACAAGTCTCTCTCC 46787 || | |||||| || Sbjct 10356480 ACCACTCTCTCCCC 10356493 >seq40 Length=23490330 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| || || | ||| || || || ||||| || ||||| ||||| | ||| || Sbjct 14323893 TCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCCGGCATGAGTCCTCTCTTCTTT 14323952 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| || |||| || ||||| ||||||||||| || ||||| ||||| || || || Sbjct 14323953 AGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAGCC 14324012 Query 46774 ACAAGTCTCTCTCC 46787 || | |||||| || Sbjct 14324013 ACCACTCTCTCCCC 14324026 >seq230 Length=1256464 Score = 96.9 bits (106), Expect = 5e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| || ||||| |||||||| || |||||| ||| | || || || || || || | Sbjct 1149257 TCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCGATGTGGATGT 1149198 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 | | ||||| || || || ||||| |||||||| || || ||||| |||| ||||||| Sbjct 1149197 TGAGGGACTGGCTCTGGTCAATGAAGGCTCCTCTGTCTGCAGCCATCTTTAAGATGGTCT 1149138 Query 75564 TTTGAGGAATTTCCCA 75579 |||||| || ||||| Sbjct 1149137 TTTGAGAGATCTCCCA 1149122 Score = 95.1 bits (104), Expect = 2e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||| ||||| |||| ||||| || ||||| || || || || ||||| || | || Sbjct 1148784 TGAAACTCTCCGGACAGAACTCTGCGTGTGTAGATGTTGCTAGTGTATGGCTCGATTGAC 1148725 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCA 75833 ||||||||||||| || |||||||| || ||||| |||||||| |||| || Sbjct 1148724 TCATTGTTTCCCAGGATCTGAGCAGTGGAGGCAGTGGGCATAGGAGCCAGCA 1148673 >seq24 Length=12449181 Score = 89.7 bits (98), Expect = 7e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 47128 ACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGA 47187 || || ||| ||||||||||||| |||| |||| ||| ||||| ||||| || ||| || Sbjct 10126978 ACCTCCTCAACTGTCCAGAATGAGGCCTGAGCTTGTTTGTACATTTTCCAGATGTCAGGA 10127037 Query 47188 TATTGGATCGGAAAAATAACAAATCTATTTGGATTTT 47224 || ||||| || ||||| ||||||| ||||| |||| Sbjct 10127038 TACTGGATTGGGAAAATGACAAATCGCTTTGGGTTTT 10127074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712850826264960