Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq10 120 6e-22 seq44 89.7 1e-12 seq41 89.7 1e-12 >seq10 Length=22665327 Score = 120 bits (132), Expect = 6e-22 Identities = 161/220 (73%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 282882 AGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGG 282941 || || || |||||||| || ||| || || |||||||||||||||| || ||||| Sbjct 4886446 AGACGCAGCACCAGATGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGTGTGCGA 4886387 Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 ||||| || || ||||| || |||||||||| | || |||||| ||||| || ||| Sbjct 4886386 CCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCA-GGGGAATGCCTTCC 4886328 Query 283002 TTGTCT-TGGATCTTTG-CTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAG 283059 || | | ||||| |||| | || ||| | || || ||||| | || || || |||| Sbjct 4886327 TTTTGTCTGGATTTTTGTCCTTGACGTTCTCAATGGTGTCACTTGGCTCAACCTCAAGAG 4886268 Query 283060 TGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||| ||||| || || | || || || || |||||||| Sbjct 4886267 TGATGGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 4886228 Score = 87.8 bits (96), Expect = 4e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 282995 ACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTC 283054 |||||||||||| |||||||| || || || | ||||| ||||| | ||||| || Sbjct 4903304 ACCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCGCTGGGCTCGACCTC 4903245 Query 283055 GAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||| ||||| |||||||| |||| ||| || || || |||||||| || Sbjct 4903244 GAGGGTGATGGTCTTACCGGTCAGAGTTTTCACAAAGATCTGCATCTT 4903197 >seq44 Length=15901873 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 1993365 TTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 1993307 >seq41 Length=15851267 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 4090816 TTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 4090874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046613428397212