Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq10 98.7 7e-16 >seq10 Length=22665327 Score = 98.7 bits (108), Expect = 7e-16 Identities = 165/234 (71%), Gaps = 5/234 (2%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || || || | || |||||| || | ||| |||||| ||||||||||| || Sbjct 4886459 CATGCCTCCCCTGAGACGCAGCACCAGATGCAAGGTGGACTCCTTCTGGATGTTGTAGTC 4886400 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| ||| | || |||||||| || || |||||||||| | |||||| || | Sbjct 4886399 AGACAGTGTGCGACCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAG- 4886341 Query 44227 AGGCACACCTTCCTTT--TCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGA 44283 || | ||||||||| || | | || | ||| | |||| | |||||||| | Sbjct 4886340 GGGAATGCCTTCCTTTTGTCTGGATTTTTGTCCTT-GACGTTCTCAATGGTGTCACTTGG 4886282 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| | || || ||||| || |||||||| || || ||||| ||||| Sbjct 4886281 CTCAACCTCAAGAGTGATGGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 4886228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359949255122226