Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq39 147 3e-30 seq4724 143 4e-29 seq2161 118 2e-21 seq5033 102 1e-16 seq49 86.0 9e-12 seq10 86.0 9e-12 >seq39 Length=16255708 Score = 147 bits (162), Expect = 3e-30 Identities = 173/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 8351 TTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAG 8410 ||||| ||| | || ||||| | || || |||||||| || ||||||||| | ||||| Sbjct 9933082 TTGACAATCTCAAAGCCCACTTTCCCACCAAAGGTGCTCGGTTTCCAGTACTCGGGGGAA 9933141 Query 8411 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTC 8470 |||||| || |||| || |||||||||||| | || || |||| || | ||| || Sbjct 9933142 CAGATGGGATTTCCCATAAGTCCTTTGAGGGAGTAGGGGGCACCCATTTCCACCATGGTC 9933201 Query 8471 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACA 8530 || || |||||||||||| | | |||||| || |||| | || | || ||||||||| Sbjct 9933202 TCCCCAAAGATGGCGTTGAGCCTGGGCTTCTCAACCAGCAGCCCAGCATAAAGCTCCACA 9933261 Query 8531 GCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584 || || || || || || | | ||||| ||||| ||||||||||||||| Sbjct 9933262 GCATCCACATCCCCATACATCTCTTCAAGTTCAGCAGCCATCTCCTTTTCTCCT 9933315 Score = 143 bits (158), Expect = 4e-29 Identities = 172/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 8351 TTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAG 8410 ||||| ||| | || ||||| | || || |||||||| || ||||||||| | ||||| Sbjct 10045738 TTGACAATCTCAAAGCCCACTTTGCCACCAAAGGTGCTTGGTTTCCAGTACTCAGGGGAA 10045797 Query 8411 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTC 8470 ||||| || |||| || |||||||||||| | || || |||| || | ||| || Sbjct 10045798 CAGATTGGATTTCCCATAAGTCCTTTGAGGGAGTAGGGGGCACCCATTTCCACCATGGTC 10045857 Query 8471 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACA 8530 || || || || ||||||| | |||||| || |||| || || || || ||||||||| Sbjct 10045858 TCCCCAAATATTGCGTTGGTCCTGGGCTTCTCAACCAGCAACCCAGTATAAAGCTCCACA 10045917 Query 8531 GCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584 || || || | ||||| | | ||||| ||||| ||||||||||||||| Sbjct 10045918 GCATCCACATGCCCGTACAACTCTTCAAGTTCAGCAGCCATCTCCTTTTCTCCT 10045971 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||| ||| || | || ||||| |||||||| || || ||||| || | | | | Sbjct 9934381 TCACCTGCGACTCCCATTGGTGTTGGGCAATCGTGCGGGACAGGAGGCAGTGTGCGAGTG 9934440 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 || ||||||||||| ||| | |||||||||||| ||| | ||||| || ||| |||| Sbjct 9934441 TAGTAGGAGAGATTTGAGTAGGCTTCCCAGCTTTTGTAACCATAGTCAGCATTGAATATA 9934500 Query 10028 GGAGGGCTGTCAATCAAATCGG 10049 || ||||| ||||||| || || Sbjct 9934501 GGGGGGCTATCAATCAGATGGG 9934522 Score = 89.7 bits (98), Expect = 7e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||| ||| || | || ||||| ||||| || || || ||||| || | | | | Sbjct 10047044 TCACCTGCGACTCCCATCGGTGTTGGGCAATCATGTGGGACAGGAGGCAGTGTGCGAGTG 10047103 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 || ||||||||||| ||| | |||||||||||| ||| | ||||| || ||| ||| Sbjct 10047104 TAGTAGGAGAGATTAGAGTAGGCTTCCCAGCTTTTGTAACCATAGTCAGCATTGAATAAA 10047163 Query 10028 GGAGGGCTGTCAATCAAAT 10046 || ||||| ||||||| || Sbjct 10047164 GGGGGGCTATCAATCAGAT 10047182 >seq4724 Length=9361 Score = 143 bits (158), Expect = 4e-29 Identities = 172/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 8351 TTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAG 8410 ||||| ||| | || ||||| | || || |||||||| || ||||||||| | ||||| Sbjct 2933 TTGACAATCTCAAAGCCCACTTTGCCACCAAAGGTGCTTGGTTTCCAGTACTCAGGGGAA 2992 Query 8411 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTC 8470 ||||| || |||| || |||||||||||| | || || |||| || | ||| || Sbjct 2993 CAGATTGGATTTCCCATAAGTCCTTTGAGGGAGTAGGGGGCACCCATTTCCACCATGGTC 3052 Query 8471 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACA 8530 || || || || ||||||| | |||||| || |||| || || || || ||||||||| Sbjct 3053 TCCCCAAATATTGCGTTGGTCCTGGGCTTCTCAACCAGCAACCCAGTATAAAGCTCCACA 3112 Query 8531 GCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584 || || || | ||||| | | ||||| ||||| ||||||||||||||| Sbjct 3113 GCATCCACATGCCCGTACAACTCTTCAAGTTCAGCAGCCATCTCCTTTTCTCCT 3166 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||| ||| || | || ||||| |||||||| || || ||||| || | | | | Sbjct 4513 TCACCTGCGACTCCCATTGGTGTTGGGCAATCGTGCGGGACAGGAGGCAGTGTGCGAGTG 4572 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 || ||||||||||| ||| | |||||||||||| ||| | ||||| || ||| |||| Sbjct 4573 TAGTAGGAGAGATTTGAGTAGGCTTCCCAGCTTTTGTAACCATAGTCAGCATTGAATATA 4632 Query 10028 GGAGGGCTGTCAATCAAATCGG 10049 || ||||| ||||||| || || Sbjct 4633 GGGGGGCTATCAATCAGATGGG 4654 >seq2161 Length=836446 Score = 118 bits (130), Expect = 2e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 || ||||| | || || || ||||| ||| ||||||| | || || || || | || Sbjct 326668 AATCCCACTTTCCCACCAAATGTGCTCGGCATCCAGTATTCAGGAGAACAAATAGCATTT 326609 Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482 |||||||||||||||| ||| | || || |||| ||| | || |||| || || | Sbjct 326608 CCCATGAGGCCTTTGAGAGAGTAGGGGGCTCCCATCTCTACCATAGTCTCCCCAAACACA 326549 Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAAT-CCGGTGTACAGCTCCACAGCCTCGACGTC 8541 |||||||| | ||| || ||||| ||||| || | |||||||| || || || | || Sbjct 326548 GCGTTGGGTCTGGGTTTCTCCAC-AAGAAGGCCAGGATACAGCTCAACCGCGTCTATGTG 326490 Query 8542 TCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGTTTTA 8590 ||||| || | | | |||||| || | |||||| |||||||||||| Sbjct 326489 ACCGTACAGCTGCTTCATTTCGGCTGCCAGCTCCTTGTCTCCTGTTTTA 326441 >seq5033 Length=268589 Score = 102 bits (112), Expect = 1e-16 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 || ||||| | || || || || || ||| ||||||| | || || || || | || Sbjct 244627 AATCCCACTTTCCCACCAAATGTACTAGGCATCCAGTATTCAGGAGAACAAATAGCATTT 244568 Query 8423 GCCATGAGGCCTTTGAGGGAG-AACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGAT 8481 |||||||||||||||| ||| | || || |||| ||| | || |||| || || | Sbjct 244567 CCCATGAGGCCTTTGAGAGAGTAGGGGGGCTCCCATCTCTACCATAGTCTCCCCAAACAC 244508 Query 8482 GGCGTTGGGACGGGGCTTTTCCACCAAGAA-TCCGGTGTACAGCTCCACAGCCTCGACGT 8540 |||||||| | ||| || |||| |||||| || | |||||||| || || || | || Sbjct 244507 AGCGTTGGGTCTGGGTTTCTCCAACAAGAAGGCCAGGATACAGCTCAACTGCATCTATGT 244448 Query 8541 CTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGTTT 8588 |||| || | | | |||||| || | |||||| |||||||||| Sbjct 244447 GATCGTACAGCTGCTTCATTTCGGCTGCCAGCTCCTTGTCTCCTGTTT 244400 >seq49 Length=11140812 Score = 86.0 bits (94), Expect = 9e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 8375 CCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8434 || || || || |||||||||||||| | |||||||| || || ||||||||||| Sbjct 6446962 CCCCCAAATGTACTGGGCTTCCAGTATTCAGGGGAGCAAATAGGATTTCCCATGAGGCCT 6446903 Query 8435 TTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8494 || ||||| || || ||||||| || | ||||| ||||| || || || | || Sbjct 6446902 TTTAGGGAAAATGGGGCCCCCATTTCCACCATGCTTTCACCAAATATTGCACCAGATCGT 6446843 Query 8495 GGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCC 8554 | ||| || | ||| | | | ||| | ||||| ||| || | || || || || || Sbjct 6446842 GTCTTCTCTAGCAAAAGAGCTGGGTAGAACTCCAGAGCATCAATATCACCATACAGTTCC 6446783 Query 8555 CTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584 ||||| ||| ||||| | ||||||| Sbjct 6446782 TCTAGTTCTTTAGCCATCTCTTCTTCTCCT 6446753 >seq10 Length=22665327 Score = 86.0 bits (94), Expect = 9e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 8375 CCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8434 || || || || |||||||||||||| | |||||||| || || ||||||||||| Sbjct 18865184 CCCCCAAATGTACTGGGCTTCCAGTATTCAGGGGAGCAAATAGGATTTCCCATGAGGCCT 18865125 Query 8435 TTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8494 || ||||| || || ||||||| || | ||||| ||||| || || || | || Sbjct 18865124 TTTAGGGAAAATGGGGCCCCCATTTCCACCATGCTTTCACCAAATATTGCACCAGATCGT 18865065 Query 8495 GGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCC 8554 | ||| || | ||| | | | ||| | ||||| ||| || | || || || || || Sbjct 18865064 GTCTTCTCTAGCAAAAGAGCTGGGTAGAACTCCAGAGCATCAATATCACCATACAGTTCC 18865005 Query 8555 CTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584 ||||| ||| ||||| | ||||||| Sbjct 18865004 TCTAGTTCTTTAGCCATCTCTTCTTCTCCT 18864975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716792764117120