Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq10 116 9e-21 >seq10 Length=22665327 Score = 116 bits (128), Expect = 9e-21 Identities = 165/224 (74%), Gaps = 11/224 (5%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || || ||||| ||||| || || || ||||| || ||||| || || || Sbjct 4886231 CAGATCTTTGTCAAAACCCTCACTGGCAAGACCATCACTCTTGAGGTTGA--GCCAAGTG 4886288 Query 177982 ACACCATCGAGAACGTCAA--ACAAAAGATTCAGGACAAA--GAAGGAATCCCTCCGGAC 178037 ||||||| ||||||||||| |||||| || || |||||| ||||| || || || ||| Sbjct 4886289 ACACCATTGAGAACGTCAAGGACAAAA-ATCCA-GACAAAAGGAAGGCATTCC-CCTGAC 4886345 Query 178038 CAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTAT 178097 ||||| | || ||||| || || |||||||| |||||||| | || || | || || Sbjct 4886346 CAGCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGTCGCACACTGTCTGACTAC 4886405 Query 178098 AACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 ||| |||| || || || || ||||||| || || | ||||| Sbjct 4886406 AACATCCAGAAGGAGTCCACCTTGCATCTGGTGCTGCGTCTCAG 4886449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203586564925332