Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq10 105 6e-18 >seq10 Length=22665327 Score = 105 bits (116), Expect = 6e-18 Identities = 159/222 (72%), Gaps = 7/222 (3%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||||||||| ||| ||||||||| ||||| ||||| || || ||||| Sbjct 4886446 AGACGCAGCACCAGATGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGTGTGCGA 4886387 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||| ||||| || || ||||| | ||| ||||| | ||||| || ||| Sbjct 4886386 CCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAG-GGGAATGCCTTCC 4886328 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTCCACCTCCAC 41820 || | || |||||| || |||| | || ||||| || | ||| ||||| | Sbjct 4886327 TTTTGTCTGGATTTTTG--TCCTTGACGTTCTCAATGGTGTCACTTGGCTCAACCTCAAG 4886270 Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || || || || || || || || |||||||| Sbjct 4886269 AGTGATGGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 4886228 Score = 82.4 bits (90), Expect = 7e-11 Identities = 68/82 (83%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 41675 TTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734 ||||||||||| ||||| || || ||||| |||| || ||||||||||| ||||| ||| Sbjct 4904796 TTCTGAATGTTGTAGTCTGAAAGCGTGCGACCGTCTTCCAGCTGCTTGCCAGCGAAAATC 4904737 Query 41735 AGGCGCTGTTGGTC-CGCGGGA 41755 || ||||| ||||| |||||| Sbjct 4904736 AGACGCTGCTGGTCAGGCGGGA 4904715 Score = 82.4 bits (90), Expect = 7e-11 Identities = 68/82 (83%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 41675 TTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734 ||||||||||| ||||| || || ||||| |||| || ||||||||||| ||||| ||| Sbjct 4905048 TTCTGAATGTTGTAGTCTGAAAGCGTGCGACCGTCTTCCAGCTGCTTGCCAGCGAAAATC 4904989 Query 41735 AGGCGCTGTTGGTC-CGCGGGA 41755 || ||||| ||||| |||||| Sbjct 4904988 AGACGCTGCTGGTCAGGCGGGA 4904967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462249806413600