Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq21 122 1e-22 seq1589 93.3 5e-14 seq19 93.3 5e-14 seq20 89.7 6e-13 >seq21 Length=45934066 Score = 122 bits (134), Expect = 1e-22 Identities = 117/150 (78%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || |||||| ||||| ||||||||||||||||| || || ||| |||||||||| ||| Sbjct 30779632 CTCCACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCGTAAAACAGATCTCTGGCTCT 30779691 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 || ||||| || || || ||||||||||| || ||||| | | ||| ||| ||||||| Sbjct 30779692 CTGCTCCTCTTTACCAGTGTTCTTTTTAAGCTCTAGGAAGTCGAAAATGTCAAAATGCCA 30779751 Query 54145 CGGTTCCAAGTATATGGTCATAACTCCAGG 54174 || |||| ||| |||| | | |||| || Sbjct 30779752 AGGCTCCAGGTACATGGCAAAAGCTCCTGG 30779781 Score = 82.4 bits (90), Expect = 9e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| ||||| || ||||| || || |||||| || | || || || || ||||| | Sbjct 30772902 TCCAGCCGTAGAAGTGCATGCTGGTGAGTTTGCCGTAGTTTGGCTCAGCGATGTGGATGT 30772961 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 | | || || || || || ||| ||||||| | ||||||||||| |||| || |||| Sbjct 30772962 TGAGCGACTGGCTCTGGTCAATGTAGGCTCCTCGATCTGCAGCCATCTTTAAAATGGTCT 30773021 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATA 53022 | || | ||| ||||| | || ||||| Sbjct 30773022 TCTGAGAAATCTCCCACACTGTCTTATA 30773049 >seq1589 Length=338889 Score = 93.3 bits (102), Expect = 5e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||||||||| || || | || ||||| | |||||||| ||||| ||||| | || | Sbjct 55630 CCTCGTCTCTGCTGATGAGCTCATTGGAGTAGGTGAGTCCAGGCATCAGGCCTCTTTTCT 55689 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | | |||| | |||| ||||||||||| || || ||||| ||||| ||||| ||||| | Sbjct 55690 TTAACCAATAGATGGCAGCAAATGATCCTGAGAAAAAAATGCCTTCCACTGCTGCAAACG 55749 Query 24277 C 24277 | Sbjct 55750 C 55750 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 24633 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 24692 || || || |||||||| || || |||| ||| | ||| ||||| ||||||||||| || Sbjct 63632 ACCTCCTCAACTGTCCAGAAAGAAGCCTGTGCTTGTTTGTACATTTTCCAGATGTCTGGA 63691 Query 24693 TATTGAATTGGAAAAATAACAAATCTATTTGGATT 24727 || ||||| || ||||| ||||||| || ||||| Sbjct 63692 TACTGAATAGGGAAAATGACAAATCGTTTGGGATT 63726 >seq19 Length=48449771 Score = 93.3 bits (102), Expect = 5e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||||||||| || || | || ||||| | |||||||| ||||| ||||| | || | Sbjct 32918980 CCTCGTCTCTGCTGATGAGCTCATTGGAGTAGGTGAGTCCAGGCATCAGGCCTCTTTTCT 32919039 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | | |||| | |||| ||||||||||| || || ||||| ||||| ||||| ||||| | Sbjct 32919040 TTAACCAATAGATGGCAGCAAATGATCCTGAGAAAAAAATGCCTTCCACTGCTGCAAACG 32919099 Query 24277 C 24277 | Sbjct 32919100 C 32919100 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 24632 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 24691 ||| || || ||||||| || || ||||||||||| || ||||| | |||||||||||| Sbjct 47568973 CACCTCCTCAGCTGTCCAGAAAGAGGCCTCTGCCTTCTTGTACATCTGCCAGATGTCATG 47569032 Query 24692 ATATTGAATTGGAAAAATAACAAA 24715 ||| |||||||| ||||| ||||| Sbjct 47569033 ATACTGAATTGGGAAAATGACAAA 47569056 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 24633 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 24692 || || || |||||||| || || |||| ||| | ||| ||||| ||||||||||| || Sbjct 32926982 ACCTCCTCAACTGTCCAGAAAGAAGCCTGTGCTTGTTTGTACATTTTCCAGATGTCTGGA 32927041 Query 24693 TATTGAATTGGAAAAATAACAAATCTATTTGGATT 24727 || ||||| || ||||| ||||||| || ||||| Sbjct 32927042 TACTGAATAGGGAAAATGACAAATCGTTTGGGATT 32927076 >seq20 Length=55201332 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 24632 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 24691 ||| || || ||||||| || || ||||||||||| || ||||| | |||||||||||| Sbjct 29496561 CACCTCCTCAGCTGTCCAGAAAGAGGCCTCTGCCTTCTTGTACATCTGCCAGATGTCATG 29496620 Query 24692 ATATTGAATTGGAAAAATAACAAA 24715 ||| |||||||| ||||| ||||| Sbjct 29496621 ATACTGAATTGGGAAAATGACAAA 29496644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593707328417040