Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq6 123 3e-23 >seq6 Length=60270059 Score = 123 bits (136), Expect = 3e-23 Identities = 195/272 (72%), Gaps = 8/272 (3%) Strand=Plus/Minus Query 83126 CCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGA 83185 ||||||| || | || |||||||||||||||||||| | ||| || | ||| || ||| Sbjct 42340884 CCGTCAGACCCGATCAGAAACTTCTCGAAGTTCCAGGCGATGTCATTTCTGCATACGGGA 42340825 Query 83186 GACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGC 83245 |||| ||| | | ||||||||||| || || | || ||||| || || Sbjct 42340824 CTCCAGATAATAAATTTGGGGTCGCTCATGAACGGCATTGGCTCATCGCTTGGGAAGGGA 42340765 Query 83246 AGGGCCTCTCGT--AGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTCGCACT 83303 || | |||| | ||||||| ||||||||| || || || ||||| || || |||| Sbjct 42340764 AG--CTTCTCCTTGAGGAAGGTGAAGAGCGGGTGAGCGTTTTTCCCGTTCACGTC-CACT 42340708 Query 83304 T-CTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAA 83362 | ||| |||||| || || ||||| |||| || ||||||||||||| ||||| ||| Sbjct 42340707 TTCTCCAAGAGCTGGAATTTGGGCTCATAGCCATTGCCAGGACGGACGTACTTCAAGGAC 42340648 Query 83363 GGCAAGATCTCGGCATTCTGGGC-GTTTTCCT 83393 | |||||| |||| || || |||||||| Sbjct 42340647 AAAAGGATCTCTTCATT-TGTGCAGTTTTCCT 42340617 Score = 96.9 bits (106), Expect = 4e-15 Identities = 118/157 (75%), Gaps = 3/157 (2%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAAC-CCAAGCACTACCAGCCCCCGAGCTCCTAGG 83449 |||| | ||||||||||| || |||||| || || || || |||||| | | | | Sbjct 42338574 CCTGATAGCCGAACTGGTTGCA-GGGAACACCCAGAACCACGAGCCCCTTCTCCGCGAAG 42338516 Query 83450 CGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCT 83509 ||| ||||||||||||||||||||||| |||||| ||| | |||||||| || || Sbjct 42338515 CGCTCGTGCAGCTCGTTCATCTGAGTGTAATCCCGGCTGGTGGTTCCTCAGAGCGAAGCC 42338456 Query 83510 ACGTTCTCGATGAGCAAGACCCGGCCCCGT-AAGAAG 83545 || |||||||| |||| ||| ||| || |||||| Sbjct 42338455 ACATTCTCGATCAGCACCACCTTGCCTTGTAAAGAAG 42338419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608782166046920