Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq7 86.0 4e-12 >seq7 Length=74282399 Score = 86.0 bits (94), Expect = 4e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461 ||||| ||||||||||||||||| || ||||||||||| || || || |||||||| || Sbjct 71536947 TATTCGGCTCCAAAATGCCTCCACTGAAATCCATAAACTGGACCCAGATCTCCTTCCTCC 71536888 Query 97462 CTATCACAGAAACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGC 97521 | ||| ||| || |||||| | | | || || || || ||||||||||| | Sbjct 71536887 CGATCGGTGAATCCGTTCTTATCCAGAAACTCTCTGGAGCCGTTAGCATCCCAAATCCTC 71536828 Query 97522 ACACC 97526 ||||| Sbjct 71536827 ACACC 71536823 Score = 86.0 bits (94), Expect = 4e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 97115 CAGTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCC 97174 |||||| ||||||||||| | || | || | ||||| || ||||| || || || | Sbjct 71539811 CAGTGATGTGGGCGATCATGTAGGTCAGCAGGGCGTAGCTGGCGATGTTGAATGGGACAC 71539752 Query 97175 CTAGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACAT 97234 | || || || || | |||| || || | |||||| || | || || | |||| | Sbjct 71539751 CGAGACCGATGTCTCCCGATCGCTGGTACAGCTGACATGACAACTCACCGTTCGACACGT 71539692 Query 97235 AAAACTGACTCAATACATGACAGGGGGGCAACGCCAT 97271 ||||||||| ||| |||||||||| |||| |||||| Sbjct 71539691 AAAACTGACACAACGCATGACAGGGCGGCAGCGCCAT 71539655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346775872575110