Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq23 84.2 4e-11 >seq23 Length=46223584 Score = 84.2 bits (92), Expect = 4e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 51901 TGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGTATTTTTCATACTTAGG 51960 |||| ||| || || ||||| || | || | |||| ||||| || ||||| | ||| Sbjct 40428986 TGGTGGTATTACATCTCCAAGGGAGTGGAGTTTCTGGACACGGTCTTCTTCATCATGAGG 40429045 Query 51961 AAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTTTACTATGTTTACTCTA 52020 || || ||||||||||| || || || ||||| ||||| || | || ||||| | || Sbjct 40429046 AAGAAGTTTAATCAGGTCAGCTTCCTGCACGTCTATCACCACTGCACAATGTTCATCCTG 40429105 Query 52021 GGATGGATAGGTATTAAATGGTTTGCTGGAGGTCAG 52056 | ||||| || || || ||| || |||| || ||| Sbjct 40429106 TGGTGGATCGGCATCAAGTGGGTTCCTGGTGGACAG 40429141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923174608656920