Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq5 89.7 8e-13 seq1136 86.0 9e-12 >seq5 Length=72500376 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || ||||| | | |||| ||| || || || ||||| || || || || || Sbjct 42095006 CCTCCCCTAAGACGCAGCACCAGATGCAATGTGGACTCTTTCTGGATGTTGTAGTCGGAC 42094947 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | || ||| ||||| |||||||||||||| ||||| || ||||| || || ||| Sbjct 42094946 AGGGTGCGGCCATCTTCTAACTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGA 42094887 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||| ||||| Sbjct 42094886 ATGCCTTCTTTGTCTTG 42094870 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||| ||| || || || ||||| || || || || || || || | || ||| ||| Sbjct 42067383 ACCAGATGCAATGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCT 42067324 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | |||||||||||||| ||||| || ||||| || || ||||| |||||||| ||||| Sbjct 42067323 AGCTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCTTG 42067265 >seq1136 Length=355867 Score = 86.0 bits (94), Expect = 9e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125 || |||| ||| || || || ||||| || || || || || || || | | ||| Sbjct 321214 AACACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCT 321155 Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCT 146185 |||| ||||| ||||||||||||||||| ||||| || || ||||| |||||||| ||| Sbjct 321154 TCTAGCTGTTTGCCAGCAAAAATCAATCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCT 321095 Query 146186 TG 146187 || Sbjct 321094 TG 321093 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||| ||| || || || ||||| || || || || || || || | || ||| ||| Sbjct 293601 ACCAGATGCAATGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCT 293542 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | |||||||||||||| ||||| || ||||| || || ||||| |||||||| ||||| Sbjct 293541 AGCTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCTTG 293483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743508527484160