Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq25 246 2e-60 >seq25 Length=37502051 Score = 246 bits (272), Expect = 2e-60 Identities = 591/887 (67%), Gaps = 13/887 (1%) Strand=Plus/Minus Query 107691 CTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATT 107750 || ||||| ||||| || || || || |||||||| |||||| ||||||| || || Sbjct 34279658 CTTAGTAAGGAAGAAGAGGATTTTCCTATCGCCTACTCAATGGTGATCCATGATAAAATC 34279599 Query 107751 GAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCAC 107810 || | || ||| |||| || | || | || || ||||| || | ||||| |||||| Sbjct 34279598 GAGATGTTCGAAAGGCTCCTCAGGGCGATTTACGCTCCTCAAAATGTGTACTGCGTCCAC 34279539 Query 107811 GTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTC 107870 ||||| ||||||| || ||| || | ||| || || || ||||| | ||||||||| Sbjct 34279538 GTGGACATGAAGTCTCCGCAGATCTTTAGAGAAGCCGTGAATGCCATCGTGTCCTGCTTC 34279479 Query 107871 CCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTG 107930 || ||||| || ||||||| || || | ||| | || ||||||||||| |||| Sbjct 34279478 CCTAATGTGTTTGTGGCCAGCAAATTAGAGAGCGTGATCTACGCCTCCTGGTCTCGAGTT 34279419 Query 107931 CAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTC-AGTGCCATGGAAGTACTT 107989 ||||| || ||||||| ||| | || ||||| | | ||| ||||| |||| ||| | Sbjct 34279418 CAAGCGGATGTGAACTGCATGCAGGATCTGCTCAA-ATCTCCAGTGCAGTGGAGGTATCT 34279360 Query 107990 ACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCT 108049 ||||| || ||||| || ||||||||||| || |||||||| || | || | | | Sbjct 34279359 GCTGAACACCTGCGGCACGGACTTCCCCATTAAAACCAATGCAGAAACCGTTCGCTCTTT 34279300 Query 108050 CAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAG---GTACCTTCTGAGTCCaaaaa 108106 || | || || ||||| ||||||||||| ||| ||||| || ||||| Sbjct 34279299 GAAACACCTCAACGGGAAGAATAGTATGGAGTCGGAGACTGTACC-----AG-GGAAAAA 34279246 Query 108107 aaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAA 108166 |||||| | | || | | | || |||| || || ||| | | || Sbjct 34279245 TTGGCGCTGGCAGTTCCATCACAACATCACGAACACCGTGATCCGGACCGATATCAGAAA 34279186 Query 108167 GGACCCTCCCCCTGATAATTTAC-CCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTC 108225 | ||||| || ||||| | ||||||| |||| ||||| || || |||| || Sbjct 34279185 GTCGCCTCCACC-GATAAACACCTCCATGTTTTCAGGAAATGCGTACTTCGTGGTTTCCA 34279127 Query 108226 GAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCA 108285 ||| ||||| || | || | ||| | | |||| ||| | || |||| | Sbjct 34279126 GAGAGTTTGTGGAATACATCATGAACAGCAAAGAGATTCAAAACCTGATGGAGTGGGAGA 34279067 Query 108286 AAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGC 108345 ||||||| || || || ||||||||| | ||||| || || ||||| || | | | | Sbjct 34279066 AAGACACGTACAGTCCTGACGAACACATGTGGGCGACGCTACAGCGGATGCCTTCGGTTC 34279007 Query 108346 CTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGC 108405 | || || || | || ||| || | || ||||||| || ||||| | | Sbjct 34279006 CAGGATCCAACTCTCCCAACAACAAATACGAGCAGTCGGACATGAACGCGATCGCTCGCC 34278947 Query 108406 TCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCT 108465 | || |||||| ||||| || |||||| | | || || || || || |||| ||| Sbjct 34278946 TGGTGAAGTGGAGCTACCATGAAGGAGATTTAAACAGCGGCGCTCCGTACCCACCATGCA 34278887 Query 108466 CTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCC 108525 | || || || | | | | ||| | ||||| ||||| |||||| | |||||| | Sbjct 34278886 CCGGGATGCACAGACGATCGGTGTGCGTGTACGGTGCCGGAGACCTGAAATGGATTGTGA 34278827 Query 108526 AGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGAT 108572 | | || || || || || |||||||| ||||| ||| |||||| Sbjct 34278826 GGCAACACCATCTTTTAGCGAACAAGTTCGACCCTGAGGTAGATGAT 34278780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348260637776502