Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq20 87.8 2e-12 seq19 87.8 2e-12 >seq20 Length=55201332 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/125 (76%), Gaps = 1/125 (1%) Strand=Plus/Plus Query 14457 TCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGT 14516 ||||||||| | | |||||| || ||||| | | ||| |||||||| ||||| |||| Sbjct 29495468 TCTCTTTAGAATCTTTAATGTAGGTGTCAATCAACAGGCTGTACATTTCTGAGTGGATGT 29495527 Query 14517 TTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCT-CTGAG 14575 ||||||| |||||||| || ||||| || || | ||||| | | || |||| ||||| Sbjct 29495528 TTTCCATTGCTATCTGGAAGCCATAGAAGCAGCGGGCTTCAGTCACCTGGACCTCCTGAG 29495587 Query 14576 TAAAA 14580 | ||| Sbjct 29495588 TGAAA 29495592 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||||||||| || || || || || || || || | ||| ||||| | ||| | || | Sbjct 29494895 CCTCATCTCTGCTGATCAGCTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCCCTCTTCT 29494954 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 ||| ||| || || | ||| || || || || ||||| |||||||| ||||||||||| | Sbjct 29494955 TTAGCCAGAAAATAGAAGCAAAAGACCCAGAGAAGAAGATTCCCTCCACTGCAGCAAAGG 29495014 Query 14346 C 14346 | Sbjct 29495015 C 29495015 >seq19 Length=48449771 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/125 (76%), Gaps = 1/125 (1%) Strand=Plus/Plus Query 14457 TCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGT 14516 ||||||||| | | |||||| || ||||| | | ||| |||||||| ||||| |||| Sbjct 47567881 TCTCTTTAGAATCTTTAATGTAGGTGTCAATCAACAGGCTGTACATTTCTGAGTGGATGT 47567940 Query 14517 TTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCT-CTGAG 14575 ||||||| |||||||| || ||||| || || | ||||| | | || |||| ||||| Sbjct 47567941 TTTCCATTGCTATCTGGAAGCCATAGAAGCAGCGGGCTTCAGTCACCTGGACCTCCTGAG 47568000 Query 14576 TAAAA 14580 | ||| Sbjct 47568001 TGAAA 47568005 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||||||||| || || || || || || || || | ||| ||||| | ||| | || | Sbjct 47567303 CCTCATCTCTGCTGATCAGCTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCCCTCTTCT 47567362 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 ||| ||| || || | ||| || || || || ||||| |||||||| ||||||||||| | Sbjct 47567363 TTAGCCAGAAAATAGAAGCAAAAGACCCAGAGAAGAAGATTCCCTCCACTGCAGCAAAGG 47567422 Query 14346 C 14346 | Sbjct 47567423 C 47567423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482334005617640