Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq5 95.1 9e-15 seq1136 89.7 4e-13 seq10 89.7 4e-13 >seq5 Length=72500376 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||||| || | || |||| || | ||| || ||||| || ||||||||||||| | Sbjct 42095006 CCTCCCCTAAGACGCAGCACCAGATGCAATGTGGACTCTTTCTGGATGTTGTAGTCGGAC 42094947 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||| || ||||| || ||| |||| | || || || || ||| Sbjct 42094946 AGGGTGCGGCCATCTTCTAACTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGA 42094887 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||| || || |||| |||||| | ||| ||||| | ||||| Sbjct 42094886 ATGCCTTCTTTGTCTTGGATTTTGGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCTACC 42094827 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||||| | || || ||||| ||||||||||| || ||||| Sbjct 42094826 TCGAGGGTGATGGTCTTTCCTGTCAAGGTTTTTACAAAGATCTGCAT 42094780 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||||| || | || |||| || | || || ||||| || ||||||||||| | | Sbjct 42095918 CCTCCCCTGAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 42095859 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||| | ||||| || ||| |||| | || || || || ||| Sbjct 42095858 AGGGTGCGGCCATCTTCTAGCTGTTTACCAGCAAAGATCAACCTCTGCTGGTCAGGGGGA 42095799 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||| || || |||| |||||| | ||| ||||||| |||||| Sbjct 42095798 ATGCCTTCTTTGTCTTGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTTGGCTCGACC 42095739 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||||||| | || || ||||| ||||| || ||||| ||||| Sbjct 42095738 TCAAGGGTGATGGTCTTTCCTGTCAAGGTTTTAACGAAAATCTGCAT 42095692 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/235 (68%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||||| || | | |||| || | ||| || ||||| || ||||||||||||| | Sbjct 42067173 CCTCCCCTGAGACGCAACACCAGATGCAATGTGGACTCTTTCTGGATGTTGTAGTCGGAC 42067114 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||| | |||||||| ||| |||| | || || || || ||| Sbjct 42067113 AGGGTGCGGCCATCTTCTAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGA 42067054 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||| || || |||| |||||| | ||| ||||||| |||||| Sbjct 42067053 ATGCCTTCTTTGTCCTGGATTTTAGCCTTGACATTCTCAATGGTGTCACTTGGCTCGACC 42066994 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAAC 18333 |||| ||||||| | || || || | || || || || || ||||| | ||||| Sbjct 42066993 TCAAGGGTGATGGTCTTACCAGTAAGGGTCTTGACGAAGATCTGCATCTGTAAAC 42066939 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||||| || | || |||| || | || || ||||| || ||||||||||| | | Sbjct 42068085 CCTCCCCTGAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 42068026 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||| | |||||||| ||| |||| | || || || || ||| Sbjct 42068025 AGGGTGCGGCCATCTTCTAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGA 42067966 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||| || || |||| |||||| | ||| ||||||| |||||| Sbjct 42067965 ATGCCTTCTTTGTCCTGGATTTTAGCCTTGACATTCTCAATGGTGTCACTTGGCTCGACC 42067906 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||||| | || || ||||| || ||||| || || ||||| Sbjct 42067905 TCGAGGGTGATGGTCTTTCCTGTCAAGGTCTTTACGAAGATCTGCAT 42067859 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 || || ||||| || ||||||||||||| || || | |||||| | |||||||| Sbjct 42094520 GTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCTAGCTGTTTGCCA 42094461 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248 ||| |||| | || || || || ||| | |||||| || || |||| |||| Sbjct 42094460 GCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCTTGGATTTTGGCCTTG 42094401 Query 18249 ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTT 18308 || | ||| ||||||| ||||| || | ||||||| |||| || || | ||| Sbjct 42094400 ACGTTCTCAATGGTGTCACTTGGCTCTACCTCGAGGGTGATGGTTTTACCAGTAAGGGTT 42094341 Query 18309 TTTACAAAAATTTGCATTTTTAAAC 18333 || ||||| || ||||| | ||||| Sbjct 42094340 TTGACAAAGATCTGCATCTGTAAAC 42094316 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 || || ||||| || ||||||||||||| || || | |||||| | |||||||| Sbjct 42094748 GTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCTAGCTGTTTGCCA 42094689 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248 ||| |||| | || || || || ||| | |||||| || || |||| |||| Sbjct 42094688 GCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTG 42094629 Query 18249 ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTT 18308 || | ||| ||||| | ||||| || | ||||||| | || || ||||| ||| Sbjct 42094628 ACATTCTCAATGGTGTCGCTTGGCTCTACCTCGAGGGTGATGGTCTTTCCTGTCAAGGTT 42094569 Query 18309 TTTACAAAAATTTGCAT 18325 |||||||| || ||||| Sbjct 42094568 TTTACAAAGATCTGCAT 42094552 >seq1136 Length=355867 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || | || || | ||| | || || ||||| || ||||||||||| | | Sbjct 321913 CCTCCTCGGAGACGCAGCACAAGGTGCAAAGTAGACTCTTTCTGGATGTTGTAGTCAGAC 321854 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | |||||| | ||||| || ||| |||| | || || || || ||| Sbjct 321853 AGGGTTCGGCCATCTTCTAGCTGTTTACCAGCAAAGATCAACCTCTGCTGGTCAGGGGGA 321794 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||| || || |||| |||||| | ||| ||||||| ||||| Sbjct 321793 ATGCCTTCTTTGTCTTGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTTGGCTCTACC 321734 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||||| | || || ||||| ||||| |||||||| ||||| Sbjct 321733 TCGAGGGTGATGGTCTTTCCTGTCAAGGTTTTAACAAAAATCTGCAT 321687 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||||| || | || |||| || | || || ||||| || ||||||||||| | | Sbjct 321457 CCTCCCCTGAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 321398 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||| | |||||||| ||| |||| | || || || || ||| Sbjct 321397 AGGGTGCGGCCATCTTCTAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGA 321338 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||| || || |||| |||||| | ||| ||||| | ||||| Sbjct 321337 ATGCCTTCTTTGTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTTGGCTCTACC 321278 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||||| | || || ||||| ||||||||||| || ||||| Sbjct 321277 TCGAGGGTGATGGTCTTTCCTGTCAAGGTTTTTACAAAGATCTGCAT 321231 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 || || ||||| || ||||||||||||| || || | |||||| | |||||||| Sbjct 293361 GTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCTAGCTGTTTGCCG 293302 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248 ||| |||| | || || || || ||| | |||||| || || |||| |||| Sbjct 293301 GCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGATTTTAGCCTTG 293242 Query 18249 ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTT 18308 || | ||| ||||||| |||||| |||| ||||||| | || || || | || Sbjct 293241 ACATTCTCAATGGTGTCACTTGGCTCGACCTCAAGGGTGATGGTCTTACCAGTAAGGGTC 293182 Query 18309 TTTACAAAAATTTGCATTTTTAAAC 18333 || || || || ||||| | ||||| Sbjct 293181 TTGACGAAGATCTGCATCTGTAAAC 293157 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 || || ||||| || ||||||||||||| || || | |||||| | |||||||| Sbjct 320287 GTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCTAGCTGTTTGCCA 320228 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248 ||| |||| | || || || || ||| | |||||| || || |||| |||| Sbjct 320227 GCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTG 320168 Query 18249 ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTT 18308 || | ||| ||||||| ||||| || | ||||||| | || || || | ||| Sbjct 320167 ACGTTCTCAATGGTGTCACTTGGCTCTACCTCGAGGGTGATGGTCTTACCAGTAAGGGTT 320108 Query 18309 TTTACAAAAATTTGCATTTTTAAAC 18333 || ||||| || ||||| | ||||| Sbjct 320107 TTGACAAAGATCTGCATCTGTAAAC 320083 >seq10 Length=45420867 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || ||||| || ||||||||||||| || || | ||| Sbjct 44693237 AGCACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCC 44693178 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || || ||||| || || |||| || | || || || || | ||| |||||||| Sbjct 44693177 TCTAACTGTTTTCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTATCT 44693118 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||||| |||||| | ||| ||||| | ||||||| || | ||||||| | Sbjct 44693117 TGAATTTTAGCCTTGACATTCTCAATGGTGTCGCTGGGCTCGACCTCGAGGGTGATGGTC 44693058 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTA 18330 || || |||| || || ||||| || ||||| |||| Sbjct 44693057 TTACCAGTCAGCGTCTTCACAAAGATCTGCATCTTTA 44693021 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || ||||| |||||||||||||||| || || | |||| Sbjct 44693465 AGCACCAGGTGGAGGGTGGACTCTTTCTGAATGTTGTAGTCGGACAGGGTGCGTCCATCT 44693406 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | || ||||| ||| |||| || | || || || || | ||| |||||||| Sbjct 44693405 TCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTATCT 44693346 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||||| |||||| | ||| ||||| | || || || | |||||| | Sbjct 44693345 TGAATTTTAGCCTTGACGTTCTCAATGGTGTCGCTTGGTTCCACCTCTAGAGTGATGGTC 44693286 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||||||||| || || ||||| || ||||| Sbjct 44693285 TTGCCGGTCAGCGTCTTCACAAAGATCTGCAT 44693254 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || || ||||| || ||||||||||||| || || | |||||| | ||| Sbjct 44693684 TGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCAAGCTGT 44693625 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| ||| |||| || | || || || || | ||| |||||||| ||| | | Sbjct 44693624 TTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTATCTTGAATCT-T 44693566 Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 || || || | ||| ||||||| ||||||| |||| |||||| |||| || || Sbjct 44693565 GGCTTTCACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTTTTTCCTGT 44693506 Query 18302 CAATGTTTTTACAAAAATTTGCAT 18325 || || || || || || ||||| Sbjct 44693505 CAGAGTCTTGACGAAGATCTGCAT 44693482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379335109480635