Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq1136 87.8 2e-12 seq5 87.8 2e-12 >seq1136 Length=355867 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 ||||||||| |||||||||||||| || || || || || ||| |||| || || | || Sbjct 321686 CATGCAGATTTTTGTTAAAACCTTGACAGGAAAGACCATCACCCTCGAGGTAGAGCCAAG 321745 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 |||| | || | || |||| ||||| | ||||||||| | || |||||| Sbjct 321746 TGACACCATTGAGAACGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCCCCTGACCA 321805 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010 ||| | || || | ||| || ||||| || |||||| | || || || |||| Sbjct 321806 GCAGAGGTTGATCTTTGCTGGTAAACAGCTAGAAGATGGCCGAACCCTGTCTGACTACAA 321865 Query 25011 CATACAGAAAGAG 25023 ||| ||||||||| Sbjct 321866 CATCCAGAAAGAG 321878 >seq5 Length=72500376 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 ||||||||| || ||||||||||| || || || || || ||| | || ||||| | || Sbjct 42095691 CATGCAGATTTTCGTTAAAACCTTGACAGGAAAGACCATCACCCTTGAGGTCGAGCCAAG 42095750 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 |||| | || | || |||| ||||| | ||||||||| | || |||||| Sbjct 42095751 TGACACCATTGAGAACGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCCCCTGACCA 42095810 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010 ||| | || || | ||| || ||||| || |||||| | || || || |||| Sbjct 42095811 GCAGAGGTTGATCTTTGCTGGTAAACAGCTAGAAGATGGCCGCACCCTGTCTGACTACAA 42095870 Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTG 25041 ||| ||||||||| |||| | ||| | ||| Sbjct 42095871 CATCCAGAAAGAGTCCACCTTGCATCTGGTG 42095901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418294196392160