Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq20 95.1 2e-14 seq19 95.1 2e-14 >seq20 Length=55201332 Score = 95.1 bits (104), Expect = 2e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 || |||||||||||||| || ||||||||||| ||| | || || || ||||||||| Sbjct 29495018 GTGGCCTTTGCTGCAGTGGAGGGAATCTTCTTCTCTGGGTCTTTTGCTTCTATTTTCTGG 29494959 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAG 102022 | ||||| ||||| | ||||||| ||||||| |||||||||| Sbjct 29494958 CTAAAGAAGAGGGGACTCATGCCTGGACTCACCTTCTCCAATGAG 29494914 >seq19 Length=48449771 Score = 95.1 bits (104), Expect = 2e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 || |||||||||||||| || ||||||||||| ||| | || || || ||||||||| Sbjct 47567426 GTGGCCTTTGCTGCAGTGGAGGGAATCTTCTTCTCTGGGTCTTTTGCTTCTATTTTCTGG 47567367 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAG 102022 | ||||| ||||| | ||||||| ||||||| |||||||||| Sbjct 47567366 CTAAAGAAGAGGGGACTCATGCCTGGACTCACCTTCTCCAATGAG 47567322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989559618196465