Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq21 122 1e-22 seq20 102 1e-16 seq19 102 1e-16 seq1589 82.4 1e-10 >seq21 Length=45934066 Score = 122 bits (134), Expect = 1e-22 Identities = 117/150 (78%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 || |||||| ||||| ||||||||||||||||| || || ||| |||||||| | ||| Sbjct 30779632 CTCCACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCGTAAAACAGATCTCTGGCTCT 30779691 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 || ||||| || || || ||||||||||| || ||||| | | ||| ||| ||||||| Sbjct 30779692 CTGCTCCTCTTTACCAGTGTTCTTTTTAAGCTCTAGGAAGTCGAAAATGTCAAAATGCCA 30779751 Query 63383 CGGTTCCAAGTATATGGCCATAACTCCAGG 63412 || |||| ||| ||||| | | |||| || Sbjct 30779752 AGGCTCCAGGTACATGGCAAAAGCTCCTGG 30779781 Score = 82.4 bits (90), Expect = 1e-10 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| ||||| || ||||| || || |||||| || | || || || || ||||| | Sbjct 30772902 TCCAGCCGTAGAAGTGCATGCTGGTGAGTTTGCCGTAGTTTGGCTCAGCGATGTGGATGT 30772961 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 | | || || || || || ||| ||||||| | ||||||||||| |||| || |||| Sbjct 30772962 TGAGCGACTGGCTCTGGTCAATGTAGGCTCCTCGATCTGCAGCCATCTTTAAAATGGTCT 30773021 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATA 62260 | || | ||| ||||| | || ||||| Sbjct 30773022 TCTGAGAAATCTCCCACACTGTCTTATA 30773049 >seq20 Length=55201332 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| || || | || || || || |||||||| ||||| || || | ||| | Sbjct 29494895 CCTCATCTCTGCTGATCAGCTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCCCTCTTCT 29494954 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || || ||||| || || || || ||||||||||| || ||||||||||||| Sbjct 29494955 TTAGCCAGAAAATAGAAGCAAAAGACCCAGAGAAGAAGATTCCCTCCACTGCAGCAAAGG 29495014 Query 33724 CAATAAGTCTCTCTCC 33739 | | | |||||| || Sbjct 29495015 CCACCACTCTCTCACC 29495030 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 34079 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 34138 ||| || || ||||||| || || ||||||||||| || ||||| | |||||||||||| Sbjct 29496561 CACCTCCTCAGCTGTCCAGAAAGAGGCCTCTGCCTTCTTGTACATCTGCCAGATGTCATG 29496620 Query 34139 ATATTGGATTGGGAAAATAACAAA 34162 ||| || ||||||||||| ||||| Sbjct 29496621 ATACTGAATTGGGAAAATGACAAA 29496644 >seq19 Length=48449771 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| || || | || || || || |||||||| ||||| || || | ||| | Sbjct 47567303 CCTCATCTCTGCTGATCAGCTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCCCTCTTCT 47567362 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || || ||||| || || || || ||||||||||| || ||||||||||||| Sbjct 47567363 TTAGCCAGAAAATAGAAGCAAAAGACCCAGAGAAGAAGATTCCCTCCACTGCAGCAAAGG 47567422 Query 33724 CAATAAGTCTCTCTCC 33739 | | | |||||| || Sbjct 47567423 CCACCACTCTCTCACC 47567438 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 34079 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 34138 ||| || || ||||||| || || ||||||||||| || ||||| | |||||||||||| Sbjct 47568973 CACCTCCTCAGCTGTCCAGAAAGAGGCCTCTGCCTTCTTGTACATCTGCCAGATGTCATG 47569032 Query 34139 ATATTGGATTGGGAAAATAACAAA 34162 ||| || ||||||||||| ||||| Sbjct 47569033 ATACTGAATTGGGAAAATGACAAA 47569056 Score = 82.4 bits (90), Expect = 1e-10 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 34080 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 34139 || || || |||||||| || || |||| ||| | ||| ||||| ||||||||||| || Sbjct 32926982 ACCTCCTCAACTGTCCAGAAAGAAGCCTGTGCTTGTTTGTACATTTTCCAGATGTCTGGA 32927041 Query 34140 TATTGGATTGGGAAAATAACAAATCTATTTGGATT 34174 || || || |||||||| ||||||| || ||||| Sbjct 32927042 TACTGAATAGGGAAAATGACAAATCGTTTGGGATT 32927076 >seq1589 Length=338889 Score = 82.4 bits (90), Expect = 1e-10 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 34080 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 34139 || || || |||||||| || || |||| ||| | ||| ||||| ||||||||||| || Sbjct 63632 ACCTCCTCAACTGTCCAGAAAGAAGCCTGTGCTTGTTTGTACATTTTCCAGATGTCTGGA 63691 Query 34140 TATTGGATTGGGAAAATAACAAATCTATTTGGATT 34174 || || || |||||||| ||||||| || ||||| Sbjct 63692 TACTGAATAGGGAAAATGACAAATCGTTTGGGATT 63726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629802460759440