Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq20 98.7 9e-16 seq19 98.7 9e-16 seq1589 95.1 1e-14 >seq20 Length=55201332 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || || ||||| || || || | ||| ||||| | ||| | || ||| Sbjct 29494897 TCATCTCTGCTGATCAGCTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCCCTCTTCTTT 29494956 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| || |||| |||||| || ||||| ||||| ||||||||||| || ||||| || Sbjct 29494957 AGCCAGAAAATAGAAGCAAAAGACCCAGAGAAGAAGATTCCCTCCACTGCAGCAAAGGCC 29495016 Query 11774 ACTACTCTTTCTCC 11787 || ||||| || || Sbjct 29495017 ACCACTCTCTCACC 29495030 >seq19 Length=48449771 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || || ||||| || || || | ||| ||||| | ||| | || ||| Sbjct 47567305 TCATCTCTGCTGATCAGCTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCCCTCTTCTTT 47567364 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| || |||| |||||| || ||||| ||||| ||||||||||| || ||||| || Sbjct 47567365 AGCCAGAAAATAGAAGCAAAAGACCCAGAGAAGAAGATTCCCTCCACTGCAGCAAAGGCC 47567424 Query 11774 ACTACTCTTTCTCC 11787 || ||||| || || Sbjct 47567425 ACCACTCTCTCACC 47567438 Score = 95.1 bits (104), Expect = 1e-14 Identities = 98/127 (77%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 11649 AACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtt 11708 ||||| ||||||| || || || ||||| || | || | ||| ||||||| |||| || Sbjct 32918978 AACCT-CGTCTCTGCTGATGAGCTCATTGGAGTAGGTGAGTCCAGGCATCAGGCCTCTTT 32919036 Query 11709 tttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAA 11768 | |||| |||| | || ||||||||||| || || || || || || ||||| ||||||| Sbjct 32919037 TCTTTAACCAATAGATGGCAGCAAATGATCCTGAGAAAAAAATGCCTTCCACTGCTGCAA 32919096 Query 11769 ATGCTAC 11775 | ||||| Sbjct 32919097 ACGCTAC 32919103 >seq1589 Length=338889 Score = 95.1 bits (104), Expect = 1e-14 Identities = 98/127 (77%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 11649 AACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtt 11708 ||||| ||||||| || || || ||||| || | || | ||| ||||||| |||| || Sbjct 55628 AACCT-CGTCTCTGCTGATGAGCTCATTGGAGTAGGTGAGTCCAGGCATCAGGCCTCTTT 55686 Query 11709 tttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAA 11768 | |||| |||| | || ||||||||||| || || || || || || ||||| ||||||| Sbjct 55687 TCTTTAACCAATAGATGGCAGCAAATGATCCTGAGAAAAAAATGCCTTCCACTGCTGCAA 55746 Query 11769 ATGCTAC 11775 | ||||| Sbjct 55747 ACGCTAC 55753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468513537835120