Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq21 122 1e-22 seq1589 93.3 6e-14 seq19 93.3 6e-14 seq20 89.7 7e-13 >seq21 Length=45934066 Score = 122 bits (134), Expect = 1e-22 Identities = 117/150 (78%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115 || |||||| ||||| ||||||||||||||||| || || ||| | |||||||| ||| Sbjct 30779632 CTCCACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCGTAAAACAGATCTCTGGCTCT 30779691 Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175 || ||||| || || || ||||||||||| || ||||| | | ||| ||| ||||||| Sbjct 30779692 CTGCTCCTCTTTACCAGTGTTCTTTTTAAGCTCTAGGAAGTCGAAAATGTCAAAATGCCA 30779751 Query 66176 CGGTTCCAAGTATATGGCCATAACTCCAGG 66205 || |||| ||| ||||| | | |||| || Sbjct 30779752 AGGCTCCAGGTACATGGCAAAAGCTCCTGG 30779781 >seq1589 Length=338889 Score = 93.3 bits (102), Expect = 6e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||||||||| || || | || ||||| | |||||||| ||||| ||||| | || | Sbjct 55630 CCTCGTCTCTGCTGATGAGCTCATTGGAGTAGGTGAGTCCAGGCATCAGGCCTCTTTTCT 55689 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | | |||| | |||| ||||||||||| || || ||||| ||||| ||||| ||||| | Sbjct 55690 TTAACCAATAGATGGCAGCAAATGATCCTGAGAAAAAAATGCCTTCCACTGCTGCAAACG 55749 Query 36300 C 36300 | Sbjct 55750 C 55750 >seq19 Length=48449771 Score = 93.3 bits (102), Expect = 6e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||||||||| || || | || ||||| | |||||||| ||||| ||||| | || | Sbjct 32918980 CCTCGTCTCTGCTGATGAGCTCATTGGAGTAGGTGAGTCCAGGCATCAGGCCTCTTTTCT 32919039 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | | |||| | |||| ||||||||||| || || ||||| ||||| ||||| ||||| | Sbjct 32919040 TTAACCAATAGATGGCAGCAAATGATCCTGAGAAAAAAATGCCTTCCACTGCTGCAAACG 32919099 Query 36300 C 36300 | Sbjct 32919100 C 32919100 Score = 89.7 bits (98), Expect = 7e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 36655 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 36714 ||| || || ||||||| || || ||||||||||| || ||||| | |||||||||||| Sbjct 47568973 CACCTCCTCAGCTGTCCAGAAAGAGGCCTCTGCCTTCTTGTACATCTGCCAGATGTCATG 47569032 Query 36715 ATATTGAATTGGAAAAATAACAAA 36738 ||| |||||||| ||||| ||||| Sbjct 47569033 ATACTGAATTGGGAAAATGACAAA 47569056 >seq20 Length=55201332 Score = 89.7 bits (98), Expect = 7e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 36655 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 36714 ||| || || ||||||| || || ||||||||||| || ||||| | |||||||||||| Sbjct 29496561 CACCTCCTCAGCTGTCCAGAAAGAGGCCTCTGCCTTCTTGTACATCTGCCAGATGTCATG 29496620 Query 36715 ATATTGAATTGGAAAAATAACAAA 36738 ||| |||||||| ||||| ||||| Sbjct 29496621 ATACTGAATTGGGAAAATGACAAA 29496644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658156979171320