Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq21 132 7e-26 seq20 120 4e-22 seq19 120 4e-22 seq1589 84.2 3e-11 >seq21 Length=45934066 Score = 132 bits (146), Expect = 7e-26 Identities = 118/148 (80%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||| ||||| ||||||||||||||||| || || ||| |||||||||| ||| ||| Sbjct 30779636 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCGTAAAACAGATCTCTGGCTCTCTGC 30779695 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 ||||| || || || ||||||||||| || ||||| | | ||| ||| ||||||| || Sbjct 30779696 TCCTCTTTACCAGTGTTCTTTTTAAGCTCTAGGAAGTCGAAAATGTCAAAATGCCAAGGC 30779755 Query 80059 TCCAAGTATATGGCCATAACTCCCGGTC 80086 |||| ||| ||||| | | |||| |||| Sbjct 30779756 TCCAGGTACATGGCAAAAGCTCCTGGTC 30779783 Score = 87.8 bits (96), Expect = 3e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| |||||||| ||||| || || |||||| || | || || || || ||||| | Sbjct 30772902 TCCAGCCGTAGAAGTGCATGCTGGTGAGTTTGCCGTAGTTTGGCTCAGCGATGTGGATGT 30772961 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 | | || || || || || ||| ||||||| | ||||||||||| |||| || |||| Sbjct 30772962 TGAGCGACTGGCTCTGGTCAATGTAGGCTCCTCGATCTGCAGCCATCTTTAAAATGGTCT 30773021 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATA 78932 | || | ||| ||||| | || ||||| Sbjct 30773022 TCTGAGAAATCTCCCACACTGTCTTATA 30773049 >seq20 Length=55201332 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| || || || || ||||| || |||||||| ||||| || || | ||| | Sbjct 29494895 CCTCATCTCTGCTGATCAGCTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCCCTCTTCT 29494954 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || || || ||||| |||||||| ||||||||||| || ||||| ||||||| Sbjct 29494955 TTAGCCAGAAAATAGAAGCAAAAGACCCAGAGAAGAAGATTCCCTCCACTGCAGCAAAGG 29495014 Query 50102 CAACAAGTCTCTCTCC 50117 | || | |||||| || Sbjct 29495015 CCACCACTCTCTCACC 29495030 Score = 87.8 bits (96), Expect = 3e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 50468 CTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTG 50527 ||||||| || || ||||||||||| || ||||| | ||||||||||||||| || |||| Sbjct 29496572 CTGTCCAGAAAGAGGCCTCTGCCTTCTTGTACATCTGCCAGATGTCATGATACTGAATTG 29496631 Query 50528 GGAAAATAACAAA 50540 ||||||| ||||| Sbjct 29496632 GGAAAATGACAAA 29496644 >seq19 Length=48449771 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| || || || || ||||| || |||||||| ||||| || || | ||| | Sbjct 47567303 CCTCATCTCTGCTGATCAGCTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCCCTCTTCT 47567362 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || || || ||||| |||||||| ||||||||||| || ||||| ||||||| Sbjct 47567363 TTAGCCAGAAAATAGAAGCAAAAGACCCAGAGAAGAAGATTCCCTCCACTGCAGCAAAGG 47567422 Query 50102 CAACAAGTCTCTCTCC 50117 | || | |||||| || Sbjct 47567423 CCACCACTCTCTCACC 47567438 Score = 87.8 bits (96), Expect = 3e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 50468 CTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTG 50527 ||||||| || || ||||||||||| || ||||| | ||||||||||||||| || |||| Sbjct 47568984 CTGTCCAGAAAGAGGCCTCTGCCTTCTTGTACATCTGCCAGATGTCATGATACTGAATTG 47569043 Query 50528 GGAAAATAACAAA 50540 ||||||| ||||| Sbjct 47569044 GGAAAATGACAAA 47569056 Score = 84.2 bits (92), Expect = 3e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 50457 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 50516 ||| || || |||||||| || || |||| ||| | ||| ||||| ||||||||||| | Sbjct 32926981 TACCTCCTCAACTGTCCAGAAAGAAGCCTGTGCTTGTTTGTACATTTTCCAGATGTCTGG 32927040 Query 50517 ATATTGGATTGGGAAAATAACAAATCTATTTGGATT 50552 ||| || || |||||||| ||||||| || ||||| Sbjct 32927041 ATACTGAATAGGGAAAATGACAAATCGTTTGGGATT 32927076 >seq1589 Length=338889 Score = 84.2 bits (92), Expect = 3e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 50457 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 50516 ||| || || |||||||| || || |||| ||| | ||| ||||| ||||||||||| | Sbjct 63631 TACCTCCTCAACTGTCCAGAAAGAAGCCTGTGCTTGTTTGTACATTTTCCAGATGTCTGG 63690 Query 50517 ATATTGGATTGGGAAAATAACAAATCTATTTGGATT 50552 ||| || || |||||||| ||||||| || ||||| Sbjct 63691 ATACTGAATAGGGAAAATGACAAATCGTTTGGGATT 63726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718251534613720