Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1589 93.3 4e-14 seq20 93.3 4e-14 seq19 93.3 4e-14 >seq1589 Length=338889 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||| ||||| || || || || || || | || | ||| ||||||| |||| ||| | Sbjct 55630 CCTCGTCTCTGCTGATGAGCTCATTGGAGTAGGTGAGTCCAGGCATCAGGCCTCTTTTCT 55689 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 |||||||| | || ||||||||||| || || || || || || || ||||| ||||||| Sbjct 55690 TTAACCAATAGATGGCAGCAAATGATCCTGAGAAAAAAATGCCTTCCACTGCTGCAAACG 55749 Query 14014 CTATTAATCGTTCTCC 14029 ||| || || || || Sbjct 55750 CTACCAACCGCTCACC 55765 >seq20 Length=55201332 Score = 93.3 bits (102), Expect = 4e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| || || || || || || || || | ||| ||||| | ||| | || | Sbjct 29494895 CCTCATCTCTGCTGATCAGCTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCCCTCTTCT 29494954 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 ||| ||| || || | |||||| ||||| || ||||| |||||||| ||||||||||| | Sbjct 29494955 TTAGCCAGAAAATAGAAGCAAAAGACCCAGAGAAGAAGATTCCCTCCACTGCAGCAAAGG 29495014 Query 14014 C 14014 | Sbjct 29495015 C 29495015 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/125 (76%), Gaps = 1/125 (1%) Strand=Plus/Plus Query 14125 TCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGT 14184 ||||||||| | | |||||| || ||||| | | ||| |||||||| ||||| |||| Sbjct 29495468 TCTCTTTAGAATCTTTAATGTAGGTGTCAATCAACAGGCTGTACATTTCTGAGTGGATGT 29495527 Query 14185 TTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCC-GAG 14243 ||||||| |||||||| || ||||| ||||| | ||||| | | || || ||| ||| Sbjct 29495528 TTTCCATTGCTATCTGGAAGCCATAGAAGCAGCGGGCTTCAGTCACCTGGACCTCCTGAG 29495587 Query 14244 TAAAA 14248 | ||| Sbjct 29495588 TGAAA 29495592 >seq19 Length=48449771 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||| ||||| || || || || || || | || | ||| ||||||| |||| ||| | Sbjct 32918980 CCTCGTCTCTGCTGATGAGCTCATTGGAGTAGGTGAGTCCAGGCATCAGGCCTCTTTTCT 32919039 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 |||||||| | || ||||||||||| || || || || || || || ||||| ||||||| Sbjct 32919040 TTAACCAATAGATGGCAGCAAATGATCCTGAGAAAAAAATGCCTTCCACTGCTGCAAACG 32919099 Query 14014 CTATTAATCGTTCTCC 14029 ||| || || || || Sbjct 32919100 CTACCAACCGCTCACC 32919115 Score = 93.3 bits (102), Expect = 4e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| || || || || || || || || | ||| ||||| | ||| | || | Sbjct 47567303 CCTCATCTCTGCTGATCAGCTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCCCTCTTCT 47567362 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 ||| ||| || || | |||||| ||||| || ||||| |||||||| ||||||||||| | Sbjct 47567363 TTAGCCAGAAAATAGAAGCAAAAGACCCAGAGAAGAAGATTCCCTCCACTGCAGCAAAGG 47567422 Query 14014 C 14014 | Sbjct 47567423 C 47567423 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/125 (76%), Gaps = 1/125 (1%) Strand=Plus/Plus Query 14125 TCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGT 14184 ||||||||| | | |||||| || ||||| | | ||| |||||||| ||||| |||| Sbjct 47567881 TCTCTTTAGAATCTTTAATGTAGGTGTCAATCAACAGGCTGTACATTTCTGAGTGGATGT 47567940 Query 14185 TTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCC-GAG 14243 ||||||| |||||||| || ||||| ||||| | ||||| | | || || ||| ||| Sbjct 47567941 TTTCCATTGCTATCTGGAAGCCATAGAAGCAGCGGGCTTCAGTCACCTGGACCTCCTGAG 47568000 Query 14244 TAAAA 14248 | ||| Sbjct 47568001 TGAAA 47568005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479716468538200