Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq1136 87.8 1e-12 >seq1136 Length=355867 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||| | || | ||||||| ||| | ||| ||| || || | ||||| ||||| Sbjct 321230 GCCTCCCCTGAGACGCAACACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCGGA 321171 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || || ||| | || || | |||||||| ||||||||||||| ||| || || | || Sbjct 321170 CAGGGTGCGTCCATCTTCTAGCTGTTTGCCAGCAAAAATCAATCTCTGCTGGTCAGGGGG 321111 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||||| || ||| | ||||| | ||| ||||||| | ||| || Sbjct 321110 AATGCCTTCTTTGTCTTGGATTTTGGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCTAC 321051 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | ||||| || ||||| || | || || || || || ||||| Sbjct 321050 CTCGAGAGTTATGGTCTTTCCTGTCAAGGTCTTAACGAAGATCTGCAT 321003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381360662007534