Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq21 129 8e-25 seq20 114 2e-20 seq19 114 2e-20 >seq21 Length=45934066 Score = 129 bits (142), Expect = 8e-25 Identities = 116/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||| ||||| ||||||||||||||||| || || ||| |||||||||| ||| ||| Sbjct 30779636 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCGTAAAACAGATCTCTGGCTCTCTGC 30779695 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 ||||| || || || ||||||||||| || ||||| | | ||| ||| ||||||| || Sbjct 30779696 TCCTCTTTACCAGTGTTCTTTTTAAGCTCTAGGAAGTCGAAAATGTCAAAATGCCAAGGC 30779755 Query 72142 TCCAAGTATATGGCCATAACTCCCGG 72167 |||| ||| ||||| | | |||| || Sbjct 30779756 TCCAGGTACATGGCAAAAGCTCCTGG 30779781 Score = 96.9 bits (106), Expect = 5e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| ||||| || ||||| || || |||||| ||| | || || || ||||| || | Sbjct 30772902 TCCAGCCGTAGAAGTGCATGCTGGTGAGTTTGCCGTAGTTTGGCTCAGCGATGTGGATGT 30772961 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 | | |||||| || || || ||| ||||||| | ||||||||||| |||| || |||| Sbjct 30772962 TGAGCGACTGGCTCTGGTCAATGTAGGCTCCTCGATCTGCAGCCATCTTTAAAATGGTCT 30773021 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATA 71015 | || | ||| ||||| | || ||||| Sbjct 30773022 TCTGAGAAATCTCCCACACTGTCTTATA 30773049 >seq20 Length=55201332 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| || || | || ||||| || |||||||| ||||| || || | ||| | Sbjct 29494895 CCTCATCTCTGCTGATCAGCTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCCCTCTTCT 29494954 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || ||||| ||||| || ||||| ||||||||||| || ||||| ||||||| Sbjct 29494955 TTAGCCAGAAAATAGAAGCAAAAGACCCAGAGAAGAAGATTCCCTCCACTGCAGCAAAGG 29495014 Query 42207 CAATAAGTCTCTCTCC 42222 | | | |||||| || Sbjct 29495015 CCACCACTCTCTCACC 29495030 >seq19 Length=48449771 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| || || | || ||||| || |||||||| ||||| || || | ||| | Sbjct 47567303 CCTCATCTCTGCTGATCAGCTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCCCTCTTCT 47567362 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || ||||| ||||| || ||||| ||||||||||| || ||||| ||||||| Sbjct 47567363 TTAGCCAGAAAATAGAAGCAAAAGACCCAGAGAAGAAGATTCCCTCCACTGCAGCAAAGG 47567422 Query 42207 CAATAAGTCTCTCTCC 42222 | | | |||||| || Sbjct 47567423 CCACCACTCTCTCACC 47567438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671123067491480