Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq21 84.2 3e-11 >seq21 Length=45934066 Score = 84.2 bits (92), Expect = 3e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 97179 CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAG 97238 || ||| | |||||| | | ||||| ||||| || || || ||||| || ||||| Sbjct 30778996 CTTTGGTATGCCATCATCGAGTCTCAGACTGAGACCGGCACACCATACATGCTTTACAAA 30778937 Query 97239 GATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTG 97298 || || || ||||| |||||||| | || ||||||||||||| || |||| || Sbjct 30778936 GACGCCTGCAACCGCAAGAGCAACCAGCAGAACCTGGGCACCATCAAATGCAGCAATTTG 30778877 Query 97299 TGCACGGAAATTGTAGAGTACGCC 97322 ||||| || ||||| |||||| || Sbjct 30778876 TGCACAGAGATTGTTGAGTACACC 30778853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741041386789480