Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq1136 98.7 8e-16 seq5 89.7 4e-13 >seq1136 Length=355867 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 |||||||| | | | ||| | |||||| |||||||| || || || ||||| || | | Sbjct 321913 CCTCCTCGGAGACGCAGCACAAGGTGCAAAGTAGACTCTTTCTGGATGTTGTAGTCAGAC 321854 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | | || || ||||||||||| ||| | || | |||||||| || ||| Sbjct 321853 AGGGTTCGGCCATCTTCTAGCTGTTTACCAGCAAAGATCAACCTCTGCTGGTCAGGGGGA 321794 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||| |||||||| ||||| || || | | | || || | ||||| Sbjct 321793 ATGCCTTCTTTGTCTTGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTTGGCTCTACC 321734 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 |||| ||| ||||| || ||||| || ||||| |||||||| ||||| Sbjct 321733 TCGAGGGTGATGGTCTTTCCTGTCAAGGTTTTAACAAAAATCTGCAT 321687 >seq5 Length=72500376 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 |||||||| | | | ||| | |||||| |||||||| || || || |||||||| | | Sbjct 42096146 CCTCCTCGGAGACGCAGCACAAGGTGCAAAGTAGACTCTTTCTGGATGTTGTAATCAGAC 42096087 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | | || || ||||||||||| ||| | || | |||||||| || ||| Sbjct 42096086 AAGGTGCGGCCATCTTCTAGCTGTTTACCAGCAAAGATCAACCTCTGCTGGTCAGGGGGA 42096027 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||| |||||||| ||||| || || | | | || |||| ||||| Sbjct 42096026 ATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTTGGCTCTACC 42095967 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| ||||| || ||||| || || ||||| || || ||||| Sbjct 42095966 TCAAGGGTGATGGTCTTTCCTGTCAAGGTCTTGACGAAGATCTGCAT 42095920 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| || ||||| || || || ||||| || | || || | | || || Sbjct 42094533 CACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTC 42094474 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||||| || ||| | || | |||||||| || ||| | ||| |||||||| Sbjct 42094473 TAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCTTG 42094414 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||||| || || | | | || || | ||||| |||| ||| |||||||| Sbjct 42094413 GATTTTGGCCTTGACGTTCTCAATGGTGTCACTTGGCTCTACCTCGAGGGTGATGGTTTT 42094354 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| || | ||||||||||| || ||||| Sbjct 42094353 ACCAGTAAGGGTTTTGACAAAGATCTGCAT 42094324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414563083838662