Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1589 102 7e-17 seq19 102 7e-17 >seq1589 Length=338889 Score = 102 bits (112), Expect = 7e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 || ||||| || || ||||| || || | || || || ||||| || |||| ||| || Sbjct 55632 TCGTCTCTGCTGATGAGCTCATTGGAGTAGGTGAGTCCAGGCATCAGGCCTCTTTTCTTT 55691 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | |||| | || |||||||| || || || ||||| || ||||| ||||||||||||||| Sbjct 55692 AACCAATAGATGGCAGCAAATGATCCTGAGAAAAAAATGCCTTCCACTGCTGCAAACGCT 55751 Query 13295 ATCAACCTTTCACC 13308 | ||||| ||||| Sbjct 55752 ACCAACCGCTCACC 55765 >seq19 Length=48449771 Score = 102 bits (112), Expect = 7e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 || ||||| || || ||||| || || | || || || ||||| || |||| ||| || Sbjct 32918982 TCGTCTCTGCTGATGAGCTCATTGGAGTAGGTGAGTCCAGGCATCAGGCCTCTTTTCTTT 32919041 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | |||| | || |||||||| || || || ||||| || ||||| ||||||||||||||| Sbjct 32919042 AACCAATAGATGGCAGCAAATGATCCTGAGAAAAAAATGCCTTCCACTGCTGCAAACGCT 32919101 Query 13295 ATCAACCTTTCACC 13308 | ||||| ||||| Sbjct 32919102 ACCAACCGCTCACC 32919115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430972299254046