Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq15 87.8 9e-13 seq6 84.2 1e-11 seq1047 82.4 4e-11 seq980 82.4 4e-11 seq22 82.4 4e-11 seq4 82.4 4e-11 seq2 82.4 4e-11 seq1 82.4 4e-11 >seq15 Length=48040578 Score = 87.8 bits (96), Expect = 9e-13 Identities = 77/96 (80%), Gaps = 3/96 (3%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAAT---TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493 ||| |||||| || ||| | |||||| | |||||||||| ||||||| |||||| Sbjct 40068483 AATGAATAAACAAACAATTAACTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTA 40068424 Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| ||||||| |||||||||||||| |||| Sbjct 40068423 TTAGCACCACGCTCTAACCAACTGAGCTAACCGGCC 40068388 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 40134383 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 40134324 Query 11528 CC 11529 || Sbjct 40134323 CC 40134322 >seq6 Length=60270059 Score = 84.2 bits (92), Expect = 1e-11 Identities = 59/67 (88%), Gaps = 1/67 (1%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 26872320 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 26872261 Query 11528 CCGTCGA 11534 || |||| Sbjct 26872260 CC-TCGA 26872255 >seq1047 Length=301823 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 253036 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 253095 Query 11528 CC 11529 || Sbjct 253096 CC 253097 >seq980 Length=351968 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||||||||||| |||| ||||||||| || Sbjct 98501 GGATCGAACCCGCGACCTTGGCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAACCGG 98442 Query 11528 CC 11529 || Sbjct 98441 CC 98440 >seq22 Length=39133080 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 2888423 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 2888482 Query 11528 CC 11529 || Sbjct 2888483 CC 2888484 >seq4 Length=78093715 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||||||| ||||||||||||| ||||||| |||| ||||||||| || Sbjct 55349635 GGATCGAACCCTCGACCTTGGCGTTATTAGCACCACGCTCTAACCAGCTGAGCTAACCGG 55349576 Query 11528 CC 11529 || Sbjct 55349575 CC 55349574 >seq2 Length=59640629 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 48176913 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 48176972 Query 11528 CC 11529 || Sbjct 48176973 CC 48176974 >seq1 Length=59578282 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 19094213 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 19094272 Query 11528 CC 11529 || Sbjct 19094273 CC 19094274 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261485071545148