Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq20 154 2e-32 seq5 102 1e-16 seq2 98.7 1e-15 >seq20 Length=55201332 Score = 154 bits (170), Expect = 2e-32 Identities = 178/240 (74%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 8735 GCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCC 8794 ||||| || || ||| |||| ||||| | || || |||||||| ||||||||||| | Sbjct 34122670 GCACTGTTCACAATCTCAAAGCCCACTTTCCCACCAAAGGTGCTTGGTTTCCAGTACTCT 34122729 Query 8795 GGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGA 8854 ||||| |||||| || |||| || ||||| ||||| | || || |||| ||| | Sbjct 34122730 GGGGAACAGATGGGATTTCCCATAAGTCCTTTAAGGGAGTAGGGCGCACCCATCTCAACC 34122789 Query 8855 ATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAAC 8914 ||| |||| || ||||||||||||| | ||||||||| |||| || || | || | | Sbjct 34122790 ATGGTCTCCCCAAAGATGGCGTTGGACCTGGGCTTTTCAACCAGCAAACCAGCATAAAGC 34122849 Query 8915 TCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 |||||||| || | |||||||| | | ||||| ||||| ||||| ||||||||| Sbjct 34122850 TCCACAGCATCCACATCTCCGTACATCTCTTCAAGTTCAGCAGCCATTTCTTTTTCTCCT 34122909 Score = 123 bits (136), Expect = 4e-23 Identities = 181/256 (71%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || || |||| |||||| | | |||||||||||| || ||| ||| || ||||| Sbjct 34124424 TCACCAATAAGGATGAGCCTTGAGGTCTGAAACAGCCTCTCATCATCCCAGTCAGGATGC 34124483 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 || | || || | |||||||||| ||| ||||| | |||||||| || ||||||||| Sbjct 34124484 TCCTGCTTTAGTATGTCGCACACTCGGTTATGTTCACGCAGCCAGATGGTGGCGTACATC 34124543 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 || || || || ||||| ||||| ||||| ||||| ||||| | || | ||| || Sbjct 34124544 ATAAGTCCGGGAACCAGCCCAAAGGCCTCATGACCCACAGCAAATCGACGAGATTCAGGT 34124603 Query 9790 ACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCA 9849 || | ||||| || ||||| || || || || |||| | || || || | ||| Sbjct 34124604 ACATGAGGAGGGTAATGCATGTCTACTTGAACCTCACTGACTGTTGGAGGGTAAACCTCA 34124663 Query 9850 CCGTCAATAATCTGAT 9865 || || | ||||| || Sbjct 34124664 CCATCCAGAATCTAAT 34124679 >seq5 Length=72500376 Score = 102 bits (112), Expect = 1e-16 Identities = 167/241 (69%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 9613 CCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCT 9672 || ||||||||||| | | |||||| || || || || |||| ||| |||||||||| Sbjct 64936353 CCTATAATGATGAGCCTGGCGGTCTGGAAGAGCTGCTCATCACCCCAGGTTGGATGTTCT 64936294 Query 9673 CGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATG 9732 ||||||| | || ||||| | |||||| || | ||||| | ||||||||||| | Sbjct 64936293 TGTTTCAGGATTTCACACACACGGTTGTGCTCACGAAGCCACAAGGTAGCGTACATGCCG 64936234 Query 9733 AGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACT 9792 || || |||| ||| || || |||| || |||| |||| || | | || ||| Sbjct 64936233 AGCCCTGGCAGCAGCCCGAACACCTCCTGCCCGATTGCCAACTGCTGCTCTGGAGGGACT 64936174 Query 9793 TCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCG 9852 ||||| || |||| | ||||| ||| |||| ||||| || || |||||| Sbjct 64936173 GATGGAGGGTAACTCATTTTGACCTGTGCATGCCGCACCGTCGGGGGGTAAATATCACCG 64936114 Query 9853 T 9853 | Sbjct 64936113 T 64936113 Score = 93.3 bits (102), Expect = 6e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 8765 CCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8824 || || || |||||||| |||||||| | ||||||||||| || ||||||||||| Sbjct 64946134 CCTCCAAATGTGCTGGGCTTCCAGTAGTCTGGGGAGCAGATAGGATTTCCCATGAGGCCT 64946075 Query 8825 TTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8884 || |||||||| || ||||||| || | ||||| ||||| || | || || || Sbjct 64946074 TTTAGGGAAAAAGGGGCCCCCATTTCCACCATGCTTTCACCAAATACCGCACCAGGTCGT 64946015 Query 8885 GGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAGGGCC 8944 | || || | || | | | ||| ||||||| ||| || || | |||||| || || Sbjct 64946014 GTTTTCTCTAGCAGAAGAGCTGGGTAGAACTCCATAGCATCAATATGTCCGTATAGTTCC 64945955 Query 8945 CTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || || || ||||||| ||||||| Sbjct 64945954 TCCAGCTCTTTAGACATTTCCTGCTCTCCTG 64945924 >seq2 Length=59640629 Score = 98.7 bits (108), Expect = 1e-15 Identities = 168/241 (70%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 8741 TTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAG 8800 || ||||| |||| ||||| | || || || |||||||| |||||||| | || || Sbjct 20916939 TTAACGATGTCAAATCCCACTTTCCCACCAAATGTGCTGGGCTTCCAGTATTCAGGAGAA 20916998 Query 8801 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTC 8860 || || | || |||||||||||||||| || | ||||| |||| || | || || Sbjct 20916999 CAAATAGCATTTCCCATGAGGCCTTTGAGAGAGTAGGGAGCTCCCATTTCCACCATAGTC 20917058 Query 8861 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAA-TCCGGTGTACAACTCCAC 8919 || || || | | |||||| | || || |||| |||||| || | |||| ||| || Sbjct 20917059 TCCCCAAACACAGAGTTGGGTCTGGATTTCTCCA-CAAGAAGGCCAGGATACAGCTCAAC 20917117 Query 8920 AGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGTTTT 8979 || | || ||||| || || | || | |||||| | || || ||||||||||| Sbjct 20917118 CTTGTCTACGTGACCGTACAGCTCCTTCAGCTGGGCAGCCAGATCTTTGTCTCCTGTTTT 20917177 Query 8980 A 8980 | Sbjct 20917178 A 20917178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708507768835120