Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq21 127 3e-24 seq20 114 2e-20 seq19 114 2e-20 >seq21 Length=45934066 Score = 127 bits (140), Expect = 3e-24 Identities = 118/150 (79%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271 || |||||| ||||| ||||||||||||||||| || || ||| |||||||||| ||| Sbjct 30779632 CTCCACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCGTAAAACAGATCTCTGGCTCT 30779691 Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331 || ||||| || || || ||||||||||| || ||||| | | ||| ||| ||||||| Sbjct 30779692 CTGCTCCTCTTTACCAGTGTTCTTTTTAAGCTCTAGGAAGTCGAAAATGTCAAAATGCCA 30779751 Query 63332 CGGTTCCAAGTATATGGCCATAACTCCAGG 63361 || |||| ||| ||||| | | |||| || Sbjct 30779752 AGGCTCCAGGTACATGGCAAAAGCTCCTGG 30779781 Score = 82.4 bits (90), Expect = 1e-10 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 |||| ||||| || ||||| || || |||||| || | || || || || ||||| | Sbjct 30772902 TCCAGCCGTAGAAGTGCATGCTGGTGAGTTTGCCGTAGTTTGGCTCAGCGATGTGGATGT 30772961 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 | | || || || || || ||| ||||||| | ||||||||||| |||| || |||| Sbjct 30772962 TGAGCGACTGGCTCTGGTCAATGTAGGCTCCTCGATCTGCAGCCATCTTTAAAATGGTCT 30773021 Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATA 62209 | || | ||| ||||| | || ||||| Sbjct 30773022 TCTGAGAAATCTCCCACACTGTCTTATA 30773049 >seq20 Length=55201332 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| || || || || ||||| || |||||||| ||||| || || | ||| | Sbjct 29494895 CCTCATCTCTGCTGATCAGCTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCCCTCTTCT 29494954 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| || || ||||| || || ||||| ||||||||||| || ||||||||||||| Sbjct 29494955 TTAGCCAGAAAATAGAAGCAAAAGACCCAGAGAAGAAGATTCCCTCCACTGCAGCAAAGG 29495014 Query 33446 CAATAAGTCTCTCTCC 33461 | | | |||||| || Sbjct 29495015 CCACCACTCTCTCACC 29495030 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 33812 CTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTG 33871 ||||||| || || ||||||||||| || ||||| | ||||||||||| ||| || |||| Sbjct 29496572 CTGTCCAGAAAGAGGCCTCTGCCTTCTTGTACATCTGCCAGATGTCATGATACTGAATTG 29496631 Query 33872 GGAAAATAACAAA 33884 ||||||| ||||| Sbjct 29496632 GGAAAATGACAAA 29496644 >seq19 Length=48449771 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| || || || || ||||| || |||||||| ||||| || || | ||| | Sbjct 47567303 CCTCATCTCTGCTGATCAGCTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCCCTCTTCT 47567362 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| || || ||||| || || ||||| ||||||||||| || ||||||||||||| Sbjct 47567363 TTAGCCAGAAAATAGAAGCAAAAGACCCAGAGAAGAAGATTCCCTCCACTGCAGCAAAGG 47567422 Query 33446 CAATAAGTCTCTCTCC 33461 | | | |||||| || Sbjct 47567423 CCACCACTCTCTCACC 47567438 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 33812 CTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTG 33871 ||||||| || || ||||||||||| || ||||| | ||||||||||| ||| || |||| Sbjct 47568984 CTGTCCAGAAAGAGGCCTCTGCCTTCTTGTACATCTGCCAGATGTCATGATACTGAATTG 47569043 Query 33872 GGAAAATAACAAA 33884 ||||||| ||||| Sbjct 47569044 GGAAAATGACAAA 47569056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622932225906680