Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq21 118 3e-21 seq24 84.2 6e-11 >seq21 Length=45934066 Score = 118 bits (130), Expect = 3e-21 Identities = 125/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| ||||||||| || || |||| |||||| || ||||| || ||| Sbjct 30779005 GCTCAGCAGCTTTGGTATGCCATCATCGAGTCTCAGACTGAGACCGGCACACCATACATG 30778946 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | |||||||| | |||||||||||| |||||||||| |||| || || || | Sbjct 30778945 CTTTACAAAGACGCCTGCAACCGCAAGAGCAACCAGCAGAACCTGGGCACCATCAAATGC 30778886 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAG 364275 ||||| | || || |||||| |||| |||||| | |||| ||| Sbjct 30778885 AGCAATTTGTGCACAGAGATTGTTGAGTACACCAGTGCCGATGAG 30778841 >seq24 Length=42172926 Score = 84.2 bits (92), Expect = 6e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 12823 GTTGATCCAAATGTCAGAGAATCCATGTCTTCAGTTGCTGTGGCATACGCTTTTCCTGTT 12882 |||| ||||||||||||| ||||| ||||| |||||||||||||| | || |||| | Sbjct 11913727 GTTGTTCCAAATGTCAGACCGTCCATATCTTCTGTTGCTGTGGCATAAACCTTCCCTGCT 11913668 Query 12883 TTTACATATGCAGCACATGTAGCTTCGGCCTCACATGGTGC 12923 || || |||||||| | || || ||||||||||| || Sbjct 11913667 TTCACCAGAGCAGCACAACTCGCCTCTGCCTCACATGGAGC 11913627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303321487403786