Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq5 114 1e-20 seq1136 109 5e-19 seq10 86.0 5e-12 >seq5 Length=72500376 Score = 114 bits (126), Expect = 1e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 115280 TTAAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAG 115339 ||| | ||||| || ||||||||||| || || || |||||||| ||| |||| ||| Sbjct 42094318 TTACAGATGCAGATCTTTGTCAAAACCCTTACTGGTAAAACCATCACCCTCGAGGTAGAG 42094377 Query 115340 TCCAGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTT 115399 | || ||||| ||| | || || ||||| || ||||||||| | ||| | Sbjct 42094378 CCAAGTGACACCATTGAGAACGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCCCCT 42094437 Query 115400 GATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGAT 115459 || ||||| || | || | ||| |||||||| ||||||||| | ||| || |||| Sbjct 42094438 GACCAGCAGAGGTTGATCTTTGCTGGCAAACAGCTAGAAGATGGCCGCACCCTGTCCGAC 42094497 Query 115460 TATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || ||||| || |||||||| || | ||| ||||| || | | ||||||| Sbjct 42094498 TACAACATCCAGAAAGAGTCCACCTTGCATCTGGTGCTGCGTCTTAGAGGAGG 42094550 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || || ||||| || | || ||||| ||||| ||| | || ||| | ||| Sbjct 42095920 ATGCAGATCTTCGTCAAGACCTTGACAGGAAAGACCATCACCCTTGAGGTAGAGCCAAGC 42095979 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | || || ||||| || ||||||||| | ||| ||| ||| Sbjct 42095980 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 42096039 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || || | || | ||| || ||||| ||||||||| | ||| || | ||||| ||| Sbjct 42096040 CAGAGGTTGATCTTTGCTGGTAAACAGCTAGAAGATGGCCGCACCTTGTCTGATTACAAC 42096099 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || || |||||||||||| | || | ||| || | | |||||||| Sbjct 42096100 ATCCAGAAAGAGTCTACTTTGCACCTTGTGCTGCGTCTCCGAGGAGG 42096146 >seq1136 Length=355867 Score = 109 bits (120), Expect = 5e-19 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 115280 TTAAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAG 115339 ||| | ||||| || ||||||||||| || || || || ||||| ||| |||| ||| Sbjct 320085 TTACAGATGCAGATCTTTGTCAAAACCCTTACTGGTAAGACCATCACCCTCGAGGTAGAG 320144 Query 115340 TCCAGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTT 115399 | || ||||| ||| | || || ||||| || ||||||||| | ||| | Sbjct 320145 CCAAGTGACACCATTGAGAACGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCCCCT 320204 Query 115400 GATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGAT 115459 || ||||| || | || | ||| |||||||| ||||||||| | ||| || |||| Sbjct 320205 GACCAGCAGAGGTTGATCTTTGCTGGCAAACAGCTAGAAGATGGCCGCACCCTGTCCGAC 320264 Query 115460 TATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || ||||| || |||||||| || | ||| ||||| || | | ||||||| Sbjct 320265 TACAACATCCAGAAAGAGTCCACCTTGCATCTGGTGCTGCGTCTTAGAGGAGG 320317 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| |||||||| ||||| | || ||||| ||||| ||| |||| ||| | || Sbjct 321687 ATGCAGATTTTTGTTAAAACCTTGACAGGAAAGACCATCACCCTCGAGGTAGAGCCAAGT 321746 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | || || ||||| || ||||||||| | ||| ||| ||| Sbjct 321747 GACACCATTGAGAACGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCCCCTGACCAG 321806 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || || | || | ||| || ||||| ||||||||| | |||| || | || || ||| Sbjct 321807 CAGAGGTTGATCTTTGCTGGTAAACAGCTAGAAGATGGCCGAACCCTGTCTGACTACAAC 321866 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || || |||||||||||| | || | ||| || | | |||||||| Sbjct 321867 ATCCAGAAAGAGTCTACTTTGCACCTTGTGCTGCGTCTCCGAGGAGG 321913 >seq10 Length=45420867 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || || ||||| || || || ||||||||||| || | || ||| |||| Sbjct 44693482 ATGCAGATCTTCGTCAAGACTCTGACAGGAAAAACCATCACTCTTGAGGTCGAGCCCAGT 44693541 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | || ||| || ||| ||||| || ||| |||| ||| ||| Sbjct 44693542 GACACCATTGAGAACGTGAAAGCCAAGATTCAAGATAAGGAGGGCATCCCACCTGACCAG 44693601 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || | || || | ||| |||||||| | ||||||| ||| || |||| || ||| Sbjct 44693602 CAGCGTCTGATCTTTGCTGGCAAACAGCTTGAAGATGGACGCACCCTGTCCGACTACAAC 44693661 Query 115466 ATTCAAAAAGAGTCTAC 115482 || || |||||||| || Sbjct 44693662 ATCCAGAAAGAGTCCAC 44693678 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || || || || ||||| || ||||||||||| || | || ||| ||||| Sbjct 44693710 ATGCAGATCTTCGTGAAGACGCTGACTGGAAAAACCATCACTTTGGAGGTCGAGCCCAGC 44693769 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | || || |||||| ||||| || ||| |||| ||| ||| Sbjct 44693770 GACACCATTGAGAACGTCAAGGCTAAAATTCAAGATAAGGAGGGCATCCCACCTGACCAG 44693829 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || | ||||| | ||| ||||| || | ||||||| ||| || | || |||||| Sbjct 44693830 CAGCGTCTTATCTTTGCCGGCAAGCAGCTTGAAGATGGGCGCACCCTGTCTGACTATAAC 44693889 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTG 115495 || || || ||||| || | || ||||| Sbjct 44693890 ATCCAGAAGGAGTCCACCCTCCACCTGGTG 44693919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425334031398760