Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq10 132 5e-26 seq5 127 2e-24 seq21 86.0 6e-12 >seq10 Length=45420867 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| | || | ||||| || || | || || ||||| ||||||||||| || | Sbjct 44693481 ACCGCCTCTCAGACGCAGCACCAGGTGGAGGGTGGACTCTTTCTGAATGTTGTAGTCGGA 44693422 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| | ||||||||||||||||| ||| | || || ||||||||||| || || Sbjct 44693421 CAGGGTGCGTCCATCTTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGG 44693362 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || ||||| ||||| ||| || ||| | || || | | ||||| Sbjct 44693361 GATGCCCTCCTTATCTTGAATTTTAGCCTTGACGTTCTCAATGGTGTCGCTTGGTTCCAC 44693302 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| ||| | |||||||||||||| || || || || || ||||| Sbjct 44693301 CTCTAGAGTGATGGTCTTGCCGGTCAGCGTCTTCACAAAGATCTGCAT 44693254 Score = 131 bits (144), Expect = 2e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || || || || || |||||||| || | | |||||| | ||| Sbjct 44694377 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCT 44694318 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 |||||||||||||| || |||| || ||||||||||| || || || || || || || Sbjct 44694317 TCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCC 44694258 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || |||||| ||| ||| ||| | ||||||| | ||||| || | ||| | |||| Sbjct 44694257 TGGATTTTTGCCTTCACATTCTCAATGGTATCACTTGGTTCCACCTCAAGAGTGATGGTC 44694198 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || || || || ||||| || ||||| Sbjct 44694197 TTGCCAGTTAAGGTCTTGACGAAGATCTGCAT 44694166 Score = 116 bits (128), Expect = 4e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | || || || || || ||||| || || | | |||||| | ||| Sbjct 44694149 AGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGACAGGGTGCGTCCATCT 44694090 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 |||||||||||||||||| | || || ||||||||||| || || || || || || ||| Sbjct 44694089 TCAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTATCT 44694030 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | | || ||||| || ||| | || |||| || || || || | ||| | ||| Sbjct 44694029 TG-AATCTTGGCTTTCACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGT 44693971 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| || |||| || || ||||| || ||||| Sbjct 44693970 CTTACCAGTCAGCGTCTTCACGAAGATCTGCAT 44693938 Score = 113 bits (124), Expect = 5e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || || || || || ||||| || || | | ||||||| | ||| Sbjct 44693921 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCAGACAGGGTGCGCCCATCT 44693862 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 |||||||||||||||||| | || || ||||||||||| || || || || || || ||| Sbjct 44693861 TCAAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTATCT 44693802 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| ||| || ||| | || || | || || || || | ||| | ||| Sbjct 44693801 TGAATTTTAGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCGACCTCCAAAGTGATGGTT 44693742 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || |||| || || ||||| || ||||| Sbjct 44693741 TTTCCAGTCAGCGTCTTCACGAAGATCTGCAT 44693710 Score = 111 bits (122), Expect = 2e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || || ||||| || |||||||| || | | |||||| | ||| Sbjct 44693693 AGAACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCT 44693634 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 |||||||| ||||| ||| | || || ||||||||||| || || || || || || ||| Sbjct 44693633 TCAAGCTGTTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTATCT 44693574 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | | || ||||| || ||| | || |||| || || || || | ||| | ||| Sbjct 44693573 TG-AATCTTGGCTTTCACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGT 44693515 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || |||| ||| || ||||| || ||||| Sbjct 44693514 TTTTCCTGTCAGAGTCTTGACGAAGATCTGCAT 44693482 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || || || || || |||||||| || | | ||||| | ||| Sbjct 44694605 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCT 44694546 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 |||||||||||||| || | || || ||||||||||| || || || || || || || Sbjct 44694545 TCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTATCC 44694486 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| ||| || ||| | || || | | ||||| || | || | |||| Sbjct 44694485 TGGATTTTGGCCTTCACGTTCTCAATGGTGTCGCTTGGTTCCACCTCGAGTGTGATGGTC 44694426 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||| || || ||||| || ||||| Sbjct 44694425 TTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 44694394 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || || ||||| || |||||||| || | | |||||| | || Sbjct 44693237 AGCACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCC 44693178 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | ||| || || || | || || ||||||||||| |||||||| || || || ||| Sbjct 44693177 TCTAACTGTTTTCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTATCT 44693118 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| ||| ||| ||| | || || | || || || || | || | |||| Sbjct 44693117 TGAATTTTAGCCTTGACATTCTCAATGGTGTCGCTGGGCTCGACCTCGAGGGTGATGGTC 44693058 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || || |||| || || || || || ||||| || Sbjct 44693057 TTACCAGTCAGCGTCTTCACAAAGATCTGCATCTT 44693023 >seq5 Length=72500376 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||| ||||| | || || ||||| || |||||||| || | || |||||| | ||||| Sbjct 42067840 CACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTC 42067781 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 ||||||||||||||| | || | || ||||||||| || ||||| |||||||| || || Sbjct 42067780 TAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTG 42067721 Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 ||||| ||| || ||| | || || | | || || || | || | |||||| Sbjct 42067720 GATTTTGGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCTACCTCGAGGGTGATGGTCTT 42067661 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||||| || |||||||| || ||||| Sbjct 42067660 TCCTGTCAAGGTCTTTACGAAGATCTGCAT 42067631 Score = 113 bits (124), Expect = 5e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || || ||||| || ||||||||||| | | |||||| | ||| Sbjct 42096131 AGCACAAGGTGCAAAGTAGACTCTTTCTGGATGTTGTAATCAGACAAGGTGCGGCCATCT 42096072 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||| || || ||| | || | || ||||||||| || ||||| |||||||| || Sbjct 42096071 TCTAGCTGTTTACCAGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCC 42096012 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| ||| ||| ||| | || || | | || || || | || | |||| Sbjct 42096011 TGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTTGGCTCTACCTCAAGGGTGATGGTC 42095952 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || ||||| || || ||||| || ||||| Sbjct 42095951 TTTCCTGTCAAGGTCTTGACGAAGATCTGCAT 42095920 >seq21 Length=45934066 Score = 86.0 bits (94), Expect = 6e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 154611 TCTTCAGAACTACTGTATTGCACAATTTCTGCGCACAAATTACTGCATCGAATGGTGCCC 154670 || || | ||| |||| | ||||| |||| ||||||||| |||||| ||||||||| Sbjct 30778842 TCATCGGCACTGGTGTACTCAACAATCTCTGTGCACAAATTGCTGCATTTGATGGTGCCC 30778901 Query 154671 AGGTTTTTCTGATTCGATTTGATGTTGCATGCGTCTTTGTACAAAATGTACGGGGTGCCC 154730 ||||| | ||| || ||| |||||| ||||||||||| | ||||| || ||||| Sbjct 30778902 AGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGCGTCTTTGTAAAGCATGTATGGTGTGCCG 30778961 Query 154731 GTTTC 154735 || || Sbjct 30778962 GTCTC 30778966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499632789788120