Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq1136 107 1e-18 seq5 107 1e-18 seq10 96.9 2e-15 >seq1136 Length=355867 Score = 107 bits (118), Expect = 1e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| | ||| || ||||| || |||||||| ||| || | | | ||||||| || Sbjct 320522 ATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCTAGCTG 320463 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||||||||| | ||||| | ||| ||||| ||||| ||||| ||||| ||||| Sbjct 320462 TTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCTTGGATTTT 320403 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | || ||| | || || || ||||| ||||| || | ||| ||||| || ||||| Sbjct 320402 GGCCTTGACATTCTCAATGGTGTCGCTTGGCTCTACCTCGAGGGTTATGGTCTTTCCTGT 320343 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 || ||||||||||| || ||||| Sbjct 320342 CAAGGTTTTTACAAAGATCTGCAT 320319 Score = 98.7 bits (108), Expect = 7e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || | ||| | ||| || ||||| || |||||||| || || | | | ||| Sbjct 320758 AACACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 320699 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 |||| ||||||||||| | || || | ||| ||||| ||||| ||||| ||||| Sbjct 320698 TCTAGCTGTTTGCCAGCAAAGATTAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCT 320639 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 |||||| || ||| | || || || ||||| ||||| || | ||| ||||| Sbjct 320638 TGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTTGGCTCTACCTCGAGGGTGATGGTC 320579 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || ||||||| ||||||||||| || ||||| Sbjct 320578 TTTCCTGTCAAGGTTTTTACAAAGATCTGCAT 320547 Score = 98.7 bits (108), Expect = 7e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| | ||| || ||||| || |||||||| || || | | | ||||||| || Sbjct 321434 ATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCTAGCTG 321375 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 |||||| || | ||||| | ||| ||||| ||||| ||||| ||||| ||||| Sbjct 321374 TTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCTTGGATTTT 321315 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | || ||| | || || || ||||| ||||| || | ||| ||||| || ||||| Sbjct 321314 GGCCTTGACATTCTCAATGGTGTCGCTTGGCTCTACCTCGAGGGTGATGGTCTTTCCTGT 321255 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 || ||||||||||| || ||||| Sbjct 321254 CAAGGTTTTTACAAAGATCTGCAT 321231 Score = 96.9 bits (106), Expect = 2e-15 Identities = 153/218 (70%), Gaps = 1/218 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| | ||| || ||||| || |||||||| ||| || | | | ||||||| || Sbjct 320294 ATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCTAGCTG 320235 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||||||||| | ||||| | ||| ||||| ||||| ||||| ||||| ||||| Sbjct 320234 TTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGATTTT 320175 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | || || | || || || || || ||||| || | ||| ||||| ||||| || Sbjct 320174 GGCCTTGACGTTCTCAATGGTGTCACTTGGCTCTACCTCGAGGGTGATGGTCTTACCAGT 320115 Query 15153 CAGAGTTTTTACAAAAATTTGCATATTTGAAATAAATT 15190 || ||||| ||||| || ||||| | | ||| ||||| Sbjct 320114 AAGGGTTTTGACAAAGATCTGCATCTGT-AAACAAATT 320078 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || | ||| | ||| || ||||| || |||||||| ||| || | | | ||| Sbjct 321214 AACACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCT 321155 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 |||| ||||||||||| | ||||| | ||| ||||| ||||| ||||| ||||| Sbjct 321154 TCTAGCTGTTTGCCAGCAAAAATCAATCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCT 321095 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 |||||| || || | || || || ||||| ||||| || | || ||||| Sbjct 321094 TGGATTTTGGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCTACCTCGAGAGTTATGGTC 321035 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || ||||||| || || || || || ||||| Sbjct 321034 TTTCCTGTCAAGGTCTTAACGAAGATCTGCAT 321003 >seq5 Length=72500376 Score = 107 bits (118), Expect = 1e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| | ||| || ||||| || |||||||| ||| || | | | ||||||| || Sbjct 42094755 ATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCTAGCTG 42094696 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||||||||| | ||||| | ||| ||||| ||||| ||||| ||||| ||||| Sbjct 42094695 TTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGATTTT 42094636 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | || ||| | || || || ||||| ||||| || | ||| ||||| || ||||| Sbjct 42094635 GGCCTTGACATTCTCAATGGTGTCGCTTGGCTCTACCTCGAGGGTGATGGTCTTTCCTGT 42094576 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 || ||||||||||| || ||||| Sbjct 42094575 CAAGGTTTTTACAAAGATCTGCAT 42094552 Score = 102 bits (112), Expect = 6e-17 Identities = 154/218 (71%), Gaps = 1/218 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| | ||| || ||||| || |||||||| ||| || | | | ||||||| || Sbjct 42094527 ATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCTAGCTG 42094468 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||||||||| | ||||| | ||| ||||| ||||| ||||| ||||| ||||| Sbjct 42094467 TTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCTTGGATTTT 42094408 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | || || | || || || || || ||||| || | ||| ||||||||||| || Sbjct 42094407 GGCCTTGACGTTCTCAATGGTGTCACTTGGCTCTACCTCGAGGGTGATGGTTTTACCAGT 42094348 Query 15153 CAGAGTTTTTACAAAAATTTGCATATTTGAAATAAATT 15190 || ||||| ||||| || ||||| | | ||| ||||| Sbjct 42094347 AAGGGTTTTGACAAAGATCTGCATCTGT-AAACAAATT 42094311 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| | ||| || ||||| || |||||||| || || | | | ||||||| || Sbjct 42095439 ATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGATAGGGTGCGGCCATCTTCTAGCTG 42095380 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||||||||| | ||||| | ||| ||||| ||||| ||||| ||||| ||||| Sbjct 42095379 TTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCTTGGATTTT 42095320 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | || ||| | || || || ||||| ||||| || | ||| ||||| || ||||| Sbjct 42095319 GGCCTTGACATTCTCAATGGTGTCGCTTGGCTCTACCTCGAGGGTGATGGTCTTTCCTGT 42095260 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 || ||||||||||| || ||||| Sbjct 42095259 CAAGGTTTTTACAAAGATCTGCAT 42095236 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 14980 GTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCA 15039 || || ||||| || |||||||| ||| || | | | |||||||| ||||| ||| Sbjct 42094976 GTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCTAACTGTTTTCCA 42094917 Query 15040 GCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTT 15099 || | ||||| | ||| ||||| ||||| ||||| ||||| |||||| || Sbjct 42094916 GCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCTTGGATTTTGGCCTTG 42094857 Query 15100 ACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTT 15159 || | || || || ||||| ||||| || | ||| ||||| || ||||||| ||| Sbjct 42094856 ACGTTCTCAATGGTGTCGCTTGGCTCTACCTCGAGGGTGATGGTCTTTCCTGTCAAGGTT 42094797 Query 15160 TTTACAAAAATTTGCAT 15176 |||||||| || ||||| Sbjct 42094796 TTTACAAAGATCTGCAT 42094780 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| | ||| || ||||| || |||||||| ||| || | | | ||||||| || Sbjct 42095211 ATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCTAGCTG 42095152 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||||||||| | ||||| | ||| ||||| ||||| ||||| ||||| ||||| Sbjct 42095151 TTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGATTTT 42095092 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | || ||| | || || || ||||| ||||| || | ||| ||||| || ||||| Sbjct 42095091 GGCCTTGACATTCTCAATGGTGTCGCTTGGCTCTACCTCGAGGGTGATGGTCTTTCCTGT 42095032 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || || ||||| Sbjct 42095031 CAAGGTCTTGACGAAGATCTGCAT 42095008 Score = 87.8 bits (96), Expect = 1e-12 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 14980 GTAGAATCTTTTTGTATGTTGTAATCGCTGAGAA--TTCTCGCGTCTTCTAATTGTTTGC 15037 ||||| ||||| || |||||||||| | || || | | | ||||||| ||||| | Sbjct 42096116 GTAGACTCTTTCTGGATGTTGTAAT--CAGACAAGGTGCGGCCATCTTCTAGCTGTTTAC 42096059 Query 15038 CAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTT 15097 |||| | ||||| | ||| ||||| ||||| ||||| ||||| |||||| | Sbjct 42096058 CAGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGATTTTGGCCT 42095999 Query 15098 TTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAG 15157 | ||| | || || || ||||| ||||| || | ||| ||||| || ||||||| | Sbjct 42095998 TGACATTCTCAATGGTGTCGCTTGGCTCTACCTCAAGGGTGATGGTCTTTCCTGTCAAGG 42095939 Query 15158 TTTTTACAAAAATTTGCAT 15176 | || || || || ||||| Sbjct 42095938 TCTTGACGAAGATCTGCAT 42095920 >seq10 Length=45420867 Score = 96.9 bits (106), Expect = 2e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| | ||| ||||| || ||||| || |||||||| ||| || | | | ||||| Sbjct 44693691 AACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTC 44693632 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||||||||||| | |||| |||||| ||||| ||| || || ||||| || Sbjct 44693631 AAGCTGTTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTATCTTG 44693572 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||| ||| ||| || | || || || || || || || || | || |||||||| Sbjct 44693571 AATCTTGGCTTTCACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTTTT 44693512 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||||||||| || || || || |||||| Sbjct 44693511 TCCTGTCAGAGTCTTGACGAAGATCTGCATA 44693481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357383623960055