Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq2 114 2e-20 seq20 109 8e-19 >seq2 Length=59640629 Score = 114 bits (126), Expect = 2e-20 Identities = 204/295 (69%), Gaps = 2/295 (1%) Strand=Plus/Plus Query 9426 ACTAATCCGACCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTT 9485 ||| | ||| || ||| ||||| | ||||| || || || | | | || || || | Sbjct 20919805 ACTCACCCGTCCAGCAGTCTGTTTGGTGAAGGAGTCCACCATGTTGCGAATGCCATGTGT 20919864 Query 9486 GATGAGGATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCG 9545 | ||| ||| || ||||| | || || || | || || || || || || | Sbjct 20919865 GGTGACGATAGAGTTGTTAAACACAAACTGGTGATAGCCGTAGATCTGATCCTGGATCTG 20919924 Query 9546 AAAATCATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCG 9605 ||| | || |||||||| | ||||||| | || ||||||||||| |||||||| || || Sbjct 20919925 AAAGTTGTCCGGCAACAGTGGATGCCAGTGATACAGGGTATTGAATTCGGCCGCAATACG 20919984 Query 9606 GTTCTGGTACT-GAAAGGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGT 9664 ||||||||||| |||| || || ||| | | ||| |||||||| | |||| ||||| Sbjct 20919985 GTTCTGGTACTGGAAACGC-TCACTGAAGATGAGCTCTGGGTCAAACTTGAGCTTGAAGT 20920043 Query 9665 GGTACCCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 ||| || || | ||||| ||||| | ||| | ||| || ||||| || || Sbjct 20920044 TGTATCCACTCAAGTGCTGAACATAGTCCTCGATCACAATTTTGATGGTCTCACC 20920098 Score = 98.7 bits (108), Expect = 1e-15 Identities = 168/244 (69%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 9726 GATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAG 9785 ||| |||||||||||||| || | ||| ||| |||| || || ||||| || || | Sbjct 20920919 GATGAGACGAGTGGTTTGGAAGATTCTCTCATCATCCCAGTCAGGATGTTCCTGCTTCAT 20920978 Query 9786 AACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGG 9845 | || ||||| | |||||| || | ||||| ||||| || ||||| || ||||| || Sbjct 20920979 GATGTCACAGACACGGTTGTGCTCACGGAGCCAAATGGTAGCATACATTATCAAACCTGG 20921038 Query 9846 CACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGC 9905 || | |||||| | |||| ||||| ||||| | | || || || | | || | Sbjct 20921039 AACCAGACCAAAGGCCTCATGGCCCACAGCAAATTTCTGCTCTTCCGGGATATGAGGAGG 20921098 Query 9906 ATACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAAC 9965 || |||| | ||||||| || || || || || |||| ||||| || | ||| Sbjct 20921099 GTAGTGCATCTCCACCTGGACGTCCTTCACAAGCGGAGGGTACACCTCACCATCCACAAC 20921158 Query 9966 CTGA 9969 |||| Sbjct 20921159 CTGA 20921162 >seq20 Length=55201332 Score = 109 bits (120), Expect = 8e-19 Identities = 167/238 (70%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 8942 TTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAG 9001 ||||| || || || || || | ||| || |||||||| |||||||||||| | ||||| Sbjct 34122676 TTCACAATCTCAAAGCCCACTTTCCCACCAAAGGTGCTTGGTTTCCAGTACTCTGGGGAA 34122735 Query 9002 CAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTC 9061 |||||| || |||| || ||||| | ||| | || || |||| ||| | ||| || Sbjct 34122736 CAGATGGGATTTCCCATAAGTCCTTTAAGGGAGTAGGGCGCACCCATCTCAACCATGGTC 34122795 Query 9062 TCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACA 9121 || || |||||||| || | || ||||| || | || |||| || || || ||| Sbjct 34122796 TCCCCAAAGATGGCGTTGGACCTGGGCTTTTCAACCAGCAAACCAGCATAAAGCTCCACA 34122855 Query 9122 GCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACAA 9179 || || || || || || | |||| | || ||||| || || || || |||| || Sbjct 34122856 GCATCCACATCTCCGTACATCTCTTCAAGTTCAGCAGCCATTTCTTTTTCTCCTAAAA 34122913 Score = 91.5 bits (100), Expect = 2e-13 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 9715 TCCCCNNTAATGATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGT 9774 || || ||| ||| || | | ||| ||||||| | ||| ||| |||| || || || Sbjct 34124424 TCACCAATAAGGATGAGCCTTGAGGTCTGAAACAGCCTCTCATCATCCCAGTCAGGATGC 34124483 Query 9775 TCGTGTTTGAGAACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATC 9834 || || || || | ||||| || | ||| ||||| | |||||| ||||||||||||||| Sbjct 34124484 TCCTGCTTTAGTATGTCGCACACTCGGTTATGTTCACGCAGCCAGATGGTGGCGTACATC 34124543 Query 9835 ATTAAACCCGGCACTAAACCAAACACTTCATTCCCCACTGCAAAGCG 9881 || | || || || | ||||| | |||| ||||| ||||| || Sbjct 34124544 ATAAGTCCGGGAACCAGCCCAAAGGCCTCATGACCCACAGCAAATCG 34124590 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 10125 ACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAAAAAT 10184 |||||||| || |||| |||||||| || ||| | ||| || | | || || Sbjct 34124982 ACCCCATGGTTCAGGGCTGTTGTGAAAGCTGGACCTTTCTTCATGTCAGATTTGAAGAAC 34125041 Query 10185 TGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATCGGGG 10244 ||||| ||||| ||||| |||| ||||||||||| || ||||||| || ||||| ||| Sbjct 34125042 TGGTGAGTAAAATGTTGGGCGAAGAAAGCGAACATAAGATTGGTGCGTTGAGGATCTGGG 34125101 Query 10245 ATAAAGGTCCTCCGAATAA 10263 || || |||||| || || Sbjct 34125102 ATGAACTTCCTCCTAAGAA 34125120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723710603388200