Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq21 118 2e-21 >seq21 Length=45934066 Score = 118 bits (130), Expect = 2e-21 Identities = 119/152 (78%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 203910 CCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGT 203969 ||| || ||| ||||| | ||||||| | ||||||| ||| || || || |||| Sbjct 30772896 CCTGCTTCCAGCCGTAGAAGTGCATGCTGGTGAGTTTGCCGTAGTTTGGCTCAGCGATGT 30772955 Query 203970 GAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATA 204028 | ||||| || |||||||| ||||| ||| | ||| || |||||||| ||||| || | | Sbjct 30772956 GGATGTTGAGCGACTGGCTCTGGTCAATGTA-GGCTCCTCGATCTGCAGCCATCTTTAAA 30773014 Query 204029 ATGGTCTTCTGCGAAATCTCCCACACCGTCTT 204060 ||||||||||| |||||||||||||| ||||| Sbjct 30773015 ATGGTCTTCTGAGAAATCTCCCACACTGTCTT 30773046 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 204192 TGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGA 204251 ||| |||||| ||||| ||||| |||| |||||| | | |||| ||||| | || || | Sbjct 30773339 TGACCTGAAACTCTCCAGACAGGACCCTGCGGGTGTAGATGTTGCTGGTGTACGGCTCAA 30773398 Query 204252 ACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCA 204311 | ||||||||||| | ||||||||| ||| ||| |||||||| || ||||| |||| Sbjct 30773399 TGGATTCGTTGTTGCCCAGAATCTGAGCTGTGGAGGCAGTGGGCATTGGGGCCAGCAGCA 30773458 Query 204312 GGGAGTTGCGCACACC 204327 | ||| ||||| || Sbjct 30773459 GACTGTTACGCACCCC 30773474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795136086456880