Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq5 91.5 1e-13 seq1136 87.8 1e-12 >seq5 Length=72500376 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| |||| | |||||| |||| |||||| ||| ||||| || || || || |||| Sbjct 42094779 GCCTCCTCTAAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCGGA 42094720 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || |||| |||| || | ||||| || |||| || || | |||||| || | ||| Sbjct 42094719 CAGGGTGCGTCCATCTTCTAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGGGG 42094660 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTT---TC 39668 | |||||||||||| ||||| || | || | | |||| ||||| || Sbjct 42094659 AATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGT---CGCTTGGCTC 42094603 Query 39669 CACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || || | || || || || || || || |||||||| |||||||||||| Sbjct 42094602 TACCTCGAGGGTGATGGTCTTTCCTGTCAAGGTTTTTACAAAGATCTGCATG 42094551 Score = 87.8 bits (96), Expect = 1e-12 Identities = 152/220 (69%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 39504 ACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTC 39563 |||||| |||| |||||| ||| ||||| || || || || |||| || ||| | Sbjct 42094995 ACGCAGCACCAGATGCAATGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCC 42094936 Query 39564 ATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTT 39623 ||| || || ||||| || |||| || || | |||||| || | ||| | ||||||||| Sbjct 42094935 ATCTTCTAACTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTT 42094876 Query 39624 GTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTT---TCCACGTCCAAAGT 39680 ||| ||||| || | || | | |||| ||||| || || || | || Sbjct 42094875 GTCTTGGATTTTGGCCTTGACGTTCTCAATGGTGT---CGCTTGGCTCTACCTCGAGGGT 42094819 Query 39681 AATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || || || || || || |||||||| |||||||||||| Sbjct 42094818 GATGGTCTTTCCTGTCAAGGTTTTTACAAAGATCTGCATG 42094779 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/231 (68%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| | ||||| |||| |||||| ||| ||||| || || || || || | | Sbjct 42068313 CCACCTCTGAGACGCAACACCAGATGCAATGTGGACTCTTTCTGGATGTTGTAGTCAGAC 42068254 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| |||| |||| ||||| || |||| || || | |||||| || | ||| Sbjct 42068253 AAGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGA 42068194 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTT---TCC 39669 | |||||||||||| ||||| || | || | | |||| ||||| || Sbjct 42068193 ATGCCTTCTTTGTCCTGGATTTTGGCCTTGACGTTCTCAATGGTGT---CGCTTGGCTCT 42068137 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || || | || || || || || || || || |||||||||||||||||| Sbjct 42068136 ACCTCGAGGGTGATGGTCTTTCCTGTCAAGGTCTTTACGAAGATCTGCATG 42068086 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/232 (68%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| |||| | |||||| |||| |||||| ||| ||||| || || || || |||| Sbjct 42095235 GCCTCCTCTAAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCGGA 42095176 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || ||| |||| || | ||||| || |||| || || | |||||| || | ||| Sbjct 42095175 CAGGGTGCGGCCATCTTCTAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGGGG 42095116 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTT---TC 39668 | |||||||||||| ||||| || | || | | |||| ||||| || Sbjct 42095115 AATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGT---CGCTTGGCTC 42095059 Query 39669 CACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || || | || || || || || || || || || ||||||||||||||| Sbjct 42095058 TACCTCGAGGGTGATGGTCTTTCCTGTCAAGGTCTTGACGAAGATCTGCATG 42095007 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/232 (68%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| ||||| | |||||| || | |||||||| ||||| || || || ||||| | Sbjct 42096147 GCCTCCTCGGAGACGCAGCACAAGGTGCAAAGTAGACTCTTTCTGGATGTTGTAATCAGA 42096088 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| ||| |||| || | ||||| || |||| || || | |||||| || | ||| Sbjct 42096087 CAAGGTGCGGCCATCTTCTAGCTGTTTACCAGCAAAGATCAACCTCTGCTGGTCAGGGGG 42096028 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTT---TC 39668 | |||||||||||| ||||| || | || | | |||| ||||| || Sbjct 42096027 AATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGT---CGCTTGGCTC 42095971 Query 39669 CACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || || | || || || || || || || || || ||||||||||||||| Sbjct 42095970 TACCTCAAGGGTGATGGTCTTTCCTGTCAAGGTCTTGACGAAGATCTGCATG 42095919 >seq1136 Length=355867 Score = 87.8 bits (96), Expect = 1e-12 Identities = 152/220 (69%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 39504 ACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTC 39563 ||||| |||| |||||| ||| ||||| || || || || |||| || |||| | Sbjct 321218 ACGCAACACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGTCC 321159 Query 39564 ATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTT 39623 ||| || | ||||| || ||||||| || | |||||| || | ||| | ||||||||| Sbjct 321158 ATCTTCTAGCTGTTTGCCAGCAAAAATCAATCTCTGCTGGTCAGGGGGAATGCCTTCTTT 321099 Query 39624 GTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTT---TCCACGTCCAAAGT 39680 ||| ||||| || | || | | |||| ||||| || || || | ||| Sbjct 321098 GTCTTGGATTTTGGCCTTGACGTTCTCAATGGTGT---CGCTTGGCTCTACCTCGAGAGT 321042 Query 39681 AATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || || || || || || || || ||||||||||||||| Sbjct 321041 TATGGTCTTTCCTGTCAAGGTCTTAACGAAGATCTGCATG 321002 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| |||| | |||||| |||| |||||| ||| ||||| || || || || |||| Sbjct 320546 GCCTCCTCTAAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCGGA 320487 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || ||| |||| || | ||||| || |||| || || | |||||| || | ||| Sbjct 320486 CAGGGTGCGGCCATCTTCTAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGGGG 320427 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTT---TC 39668 | |||||||||||| ||||| || | || | | |||| ||||| || Sbjct 320426 AATGCCTTCTTTGTCTTGGATTTTGGCCTTGACATTCTCAATGGTGT---CGCTTGGCTC 320370 Query 39669 CACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || || | || || || || || || || |||||||| |||||||||||| Sbjct 320369 TACCTCGAGGGTTATGGTCTTTCCTGTCAAGGTTTTTACAAAGATCTGCATG 320318 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/219 (69%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 39504 ACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTC 39563 |||||| |||| |||||| ||| ||||| || || || || |||| || |||| | Sbjct 293836 ACGCAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGTCC 293777 Query 39564 ATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTT 39623 ||| || | ||||| ||| |||| || || | |||||| || | ||| | ||||||||| Sbjct 293776 ATCTTCTAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTT 293717 Query 39624 GTCGCATATTTTTTGTTTAATCGTCGCTACTGTGT--CTGCGCTTTCCACGTCCAAAGTA 39681 ||| ||||| || | || | | |||| || || || || || | || Sbjct 293716 GTCCTGGATTTTAGCCTTGACATTCTCAATGGTGTCACTTGGC--TCGACCTCAAGGGTG 293659 Query 39682 ATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || || ||||| || | || || ||||||||||||||| Sbjct 293658 ATGGTCTTACCAGTAAGGGTCTTGACGAAGATCTGCATG 293620 Score = 82.4 bits (90), Expect = 5e-11 Identities = 151/220 (69%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 39504 ACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTC 39563 |||||| |||| |||||| ||| ||||| || || || || || | || ||| | Sbjct 321446 ACGCAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCC 321387 Query 39564 ATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTT 39623 ||| || | ||||| ||| |||| || || | |||||| || | ||| | ||||||||| Sbjct 321386 ATCTTCTAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTT 321327 Query 39624 GTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTT---TCCACGTCCAAAGT 39680 ||| ||||| || | || | | |||| ||||| || || || | || Sbjct 321326 GTCTTGGATTTTGGCCTTGACATTCTCAATGGTGT---CGCTTGGCTCTACCTCGAGGGT 321270 Query 39681 AATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || || || || || || |||||||| |||||||||||| Sbjct 321269 GATGGTCTTTCCTGTCAAGGTTTTTACAAAGATCTGCATG 321230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347361458850659