Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq8 163 1e-34 seq15 105 3e-17 seq10 98.7 4e-15 seq1325 91.5 6e-13 seq14 89.7 2e-12 seq1429 86.0 2e-11 >seq8 Length=54304671 Score = 163 bits (180), Expect = 1e-34 Identities = 448/682 (66%), Gaps = 7/682 (1%) Strand=Plus/Minus Query 450917 ATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTA 450976 ||||| |||||||| |||||||| | || ||||| || || | ||| |||| || || Sbjct 24969999 ATTGGCATTGATCTGGGAACCACTTACTCCTGTGTTGGAGTGTTCCAGCATGGCAAAGTG 24969940 Query 450977 GAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACGGAT 451036 || || || || || || |||||| ||||| ||||| | || |||||| || Sbjct 24969939 GAGATCATCGCTAACGATCAAGGAAACCGAACCACTCCAAGCTATGTGGCTTTTACAGAC 24969880 Query 451037 TCAGAAAGACTTTTAGGGCAAGCTGCTAAAT--CAATGGTAAATTCAAATGCCAAAAACA 451094 |||||||||| | || | ||||| ||| ||| || || |||| |||| Sbjct 24969879 ACAGAAAGACTCATCGGAGATGCTGCCAAAAACCAAGTCGCCATG--AACCCCAACAACA 24969822 Query 451095 CAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAAAAAG 451154 | | | ||| || ||||| | |||||| | | || ||||||| | ||| || | Sbjct 24969821 CCATCTTTGACGCCAAACGACTGATTGGCAGAAAGTTTGATGATCAGGTTGTCCAGTCTG 24969762 Query 451155 AGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTCAAGTAA 451214 | | || | | | | | | || | | | || | || || || | ||||||| Sbjct 24969761 ACATGAAGCTTTGGCCATTTAAGGTCATCAGTGAAGATGGCAAACCAAAAGTTCAAGTCG 24969702 Query 451215 ATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTA 451274 | || ||||| |||| || || || ||||| || || ||||||||||| || | Sbjct 24969701 AGTACAAAGGGGAAAACAAGACATTCTACCCTGAGGAGATCTCATCTATGGTCCTGGTCA 24969642 Query 451275 AAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTG 451334 |||||| ||| | || ||| || | ||| | ||| | | |||| || || || | Sbjct 24969641 AAATGAGAGAGATTGCCGAAGCCTACCTGGGTCATAGAGTCAATAATGCTGTCATCACAG 24969582 Query 451335 TTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTG 451394 | || || || ||||| ||| |||| ||||||| || ||||| ||||| ||||| | Sbjct 24969581 TCCCAGCGTACTTCAACGATTCACAGAGGCAAGCGACCAAAGACGCAGGGGTCATTGCCG 24969522 Query 451395 GTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAG 451454 | || || || || |||||||| ||||| || ||||||||||| | || || || || | Sbjct 24969521 GATTGAACGTGCTGCGAATTATCAATGAGCCCACAGCAGCTGCCATCGCCTACGGCCT-G 24969463 Query 451455 GAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTC 451514 || || | ||| | ||| | ||| | | | || || | || ||||| || Sbjct 24969462 GACAAGGGCAGGAA--GGGAGAGAGGAATGTCCTGATCTTCGACCTCGGCGGAGGCACCT 24969405 Query 451515 ATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTG 451574 |||| || | || | ||||| |||||| | |||||||| || || || || | Sbjct 24969404 TTGATGTCTCCATCCTGACGATTGAGGATGGGATCTTTGAAGTGAAAGCCACAGCAGGGG 24969345 Query 451575 ATACTCATCTAGGAGGTGAAGA 451596 | |||||||| || || || || Sbjct 24969344 ACACTCATCTGGGTGGAGAGGA 24969323 Score = 93.3 bits (102), Expect = 2e-13 Identities = 450/708 (64%), Gaps = 17/708 (2%) Strand=Plus/Plus Query 450905 aaaaaaGTAGCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAA 450964 ||| || | || ||||| ||||| || || ||||||| || ||||| || || | || Sbjct 4798743 AAAGAAATCGCTATTGGCATTGACCTGGGCACCACCTACTCCTGTGTGGGGGTGTTTCAG 4798802 Query 450965 AATGGAAATGTAGAAATTATAGCAAATGACCAAGG-ATCACGAACTACTCCTTCATGGGT 451023 ||||||| || || || || || || ||||| || | || |||| || || || | | Sbjct 4798803 CATGGAAAAGTGGAGATCATCGCCAACGACCAGGGCAACA-GAACAACACC--CA--GCT 4798857 Query 451024 AAGTT----TTACGGATTCAGAAAGACTTTTAGGGCAAGCTGCTAAATCAATGGTAAATT 451079 | ||| | || || |||| || || | || | || |||||| ||| Sbjct 4798858 ATGTTGCCTTCACAGACACAGAGAGGCTGATTGGAGACGCAGCTAAAAACCAGGTGGCCA 4798917 Query 451080 CAAATGCCAAAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATG 451139 ||| |||| ||||| || | |||||| || | | || ||| | | || |||||| Sbjct 4798918 TGAATCCCAACAACACGGTGTTTGATGCCAAGAGGCTGATCGGCAGGAGGTTTGATGACC 4798977 Query 451140 ATACTGTACAAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGC 451199 | || || || | || || || | | || || | | | |||||||| Sbjct 4798978 CTGTAGTGCAGTCTGACATGAAGCACTGGTCCTTCAAAGTCGTCAGTGATGGAGGAAAGC 4799037 Query 451200 CCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCAT 451259 | | || ||| | | ||||| |||| || || ||| ||||||||| ||||| | Sbjct 4799038 CAAAAGTTGCAGTGGAACACAAAGGAGAAAACAAGACCTTTAATCCTGAAGAGATTTCCT 4799097 Query 451260 CTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTG 451319 | ||||| || || ||||| || | |||||| ||| | || || || Sbjct 4799098 CCATGGTCCTGGTGAAGATGAAGGAGATTGCAGAAGCTTATCTGGGGCAGAAGGTGACCA 4799157 Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 | ||||| || || ||||| || |||||||| || | || | || || |||||||||| Sbjct 4799158 ACGCAGTTATCACAGTTCCAGCCTATTTCAACGACTCCCAGAGACAGGCCACTAAAGATG 4799217 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 | ||| || ||||| | ||||| || || || || || || || || || || || Sbjct 4799218 CTGGAGTCATCGCTGGACTGAATGTGCTCCGCATCATCAACGAGCCCACGGCTGCAGCCA 4799277 Query 451440 TAGCATATGGACTAGGAAAATCAAAAG--AAACAGAAGaaaaaaaTATTTTAGTATTTGA 451497 | || || || || ||| |||| | || | ||| || | | | ||||| Sbjct 4799278 TCGCCTACGGCCT-GGA----CAAAGGCAAATCCTCAGAGCGCAACGTGCTGATCTTTGA 4799332 Query 451498 TTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGT 451557 | || ||||| || || || | || | |||||||| || | ||||| || Sbjct 4799333 CCTGGGCGGAGGCACCTTCGACGTGTCCATCCTGACCATTGAAGACGGCATCTTTGAGGT 4799392 Query 451558 AAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 ||||| ||| ||| || |||||||| || ||||| || |||| || Sbjct 4799393 GAAGGCCACCGCTGGAGACACTCATCTGGGCGGTGAGGACTTTGACAA 4799440 >seq15 Length=48040578 Score = 105 bits (116), Expect = 3e-17 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 ||||||| ||||| || || ||||| || ||||| | || || ||||| || ||||||| Sbjct 37842861 ATGCAGTGATTACGGTGCCTGCTTACTTTAATGACTCCCAGCGCCAAGCCACCAAAGATG 37842802 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 | ||| || ||||| | ||||| ||||| || || || ||||| |||||||||||| Sbjct 37842801 CTGGAACCATCGCTGGCCTTAATGTCCTTCGCATCATCAACGAACCAACAGCAGCTGCTA 37842742 Query 451440 TAGCATATGGA 451450 | ||||||||| Sbjct 37842741 TTGCATATGGA 37842731 >seq10 Length=45420867 Score = 98.7 bits (108), Expect = 4e-15 Identities = 156/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || ||||||||||| || || |||||||| || || | | Sbjct 44693938 ATGCAGATCTTCGTGAAGACGCTGACTGGTAAGACCATCACTCTTGAGGTCGAGCCCAGT 44693997 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | ||| || |||||||||||||| || || || ||||| || Sbjct 44693998 GACACCATTGAGAACGTGAAAGCCAAGATTCAAGATAAGGAGGGCATCCCACCTGACCAG 44694057 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || || | || || || |||||||||||| | || || | || ||||| Sbjct 44694058 CAGCGTCTGATCTTTGCCGGCAAGCAGCTTGAAGATGGACGCACCCTGTCCGACTATAAC 44694117 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 || | ||||| | || || || | || | | |||||||| Sbjct 44694118 ATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGTCTGAGAGG 44694161 Score = 98.7 bits (108), Expect = 4e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || | ||||| || || || |||||||| || ||| || | Sbjct 44694166 ATGCAGATCTTCGTCAAGACCTTAACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGT 44694225 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| |||||| | | || |||||| || || ||||| || || || ||||| || Sbjct 44694226 GATACCATTGAGAATGTGAAGGCAAAAATCCAGGACAAGGAGGGCATCCCACCTGACCAG 44694285 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | |||||| | || || || |||||||||||| | || || | || || || Sbjct 44694286 CAGCGTCTGATTTTCGCTGGCAAGCAGCTTGAAGATGGACGCACCCTGTCCGACTACAAC 44694345 Query 391230 ATTGATAAGGATGCAACACTTCAC 391253 || | ||||| | || || ||| Sbjct 44694346 ATCCAGAAGGAGTCCACCCTCCAC 44694369 Score = 91.5 bits (100), Expect = 6e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 450918 TTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTAG 450977 |||| |||||||| || ||||||| || ||||||||||| | |||| ||||||| || | Sbjct 29850352 TTGGTATTGATCTCGGGACCACCTACTCCTGTGTAGGTGTCTTCCAACATGGAAAAGTTG 29850411 Query 450978 AAATTATAGCAAATGACCAAGGA 451000 ||||||| || |||||||||||| Sbjct 29850412 AAATTATCGCTAATGACCAAGGA 29850434 Score = 89.7 bits (98), Expect = 2e-12 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || ||||| || ||||| || |||||||| || || | | Sbjct 44693482 ATGCAGATCTTCGTCAAGACTCTGACAGGAAAAACCATCACTCTTGAGGTCGAGCCCAGT 44693541 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | ||| || |||||||||||||| || || || ||||| || Sbjct 44693542 GACACCATTGAGAACGTGAAAGCCAAGATTCAAGATAAGGAGGGCATCCCACCTGACCAG 44693601 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || || | || ||||| |||||||||||| | || || | || || || Sbjct 44693602 CAGCGTCTGATCTTTGCTGGCAAACAGCTTGAAGATGGACGCACCCTGTCCGACTACAAC 44693661 Query 391230 AT 391231 || Sbjct 44693662 AT 44693663 Score = 84.2 bits (92), Expect = 9e-11 Identities = 153/224 (68%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || ||||| || || || || ||||| || || ||| || Sbjct 44693254 ATGCAGATCTTTGTGAAGACGCTGACCGGCAAGACCATCACTCTAGAGGTGGAACCAAGC 44693313 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | || ||||||||||||||||| || || || ||||| || Sbjct 44693314 GACACCATTGAGAACGTCAAGGCTAAAATTCAAGATAAGGAGGGCATCCCACCTGACCAG 44693373 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || || | || || || |||||||||||| | || || | || || || Sbjct 44693374 CAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAAGATGGACGCACCCTGTCCGACTACAAC 44693433 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 ||| | || || | || || ||| | || | | |||||||| Sbjct 44693434 ATTCAGAAAGAGTCCACCCTCCACCTGGTGCTGCGTCTGAGAGG 44693477 Score = 84.2 bits (92), Expect = 9e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || |||||||| || || || || || || || ||| || Sbjct 44694394 ATGCAGATCTTCGTCAAGACGCTGACTGGCAAGACCATCACACTCGAGGTGGAACCAAGC 44694453 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | || ||||| || |||||||| || || || ||||| || Sbjct 44694454 GACACCATTGAGAACGTGAAGGCCAAAATCCAGGATAAGGAGGGCATCCCACCTGACCAG 44694513 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || ||| | || || || |||||||||||| | ||| || | || || || Sbjct 44694514 CAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAAGATGGACGCACTCTGTCCGACTACAAC 44694573 Query 391230 ATTGATAAGGATGCAACACTTCAC 391253 || | ||||| | || || ||| Sbjct 44694574 ATCCAGAAGGAGTCCACCCTCCAC 44694597 >seq1325 Length=229321 Score = 91.5 bits (100), Expect = 6e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 450918 TTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTAG 450977 |||| |||||||| || ||||||| || ||||||||||| | |||| ||||||| || | Sbjct 54837 TTGGTATTGATCTCGGGACCACCTACTCCTGTGTAGGTGTCTTCCAACATGGAAAAGTTG 54896 Query 450978 AAATTATAGCAAATGACCAAGGA 451000 ||||||| || |||||||||||| Sbjct 54897 AAATTATCGCTAATGACCAAGGA 54919 >seq14 Length=52660232 Score = 89.7 bits (98), Expect = 2e-12 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 451364 CAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAA 451423 || |||||||| ||||| ||||| ||||| ||||||||||| || || | |||||||| Sbjct 12157369 CAGGCAACTAAGGATGCTGGACAGATTGCAGGTTTAAATGTGCTCCGTGTCATTAATGAG 12157428 Query 451424 CCTACAGCAGCTGCTCTAGCATATGGACT 451452 || || || |||||| |||| |||||||| Sbjct 12157429 CCAACTGCTGCTGCTTTAGCCTATGGACT 12157457 >seq1429 Length=399735 Score = 86.0 bits (94), Expect = 2e-11 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 451364 CAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAA 451423 || |||||||| ||||| ||||| ||||| ||||||||||| || || | |||||||| Sbjct 267829 CAGGCAACTAAGGATGCTGGACAGATTGCAGGTTTAAATGTGCTCCGTGTCATTAATGAG 267888 Query 451424 CCTACAGCAGCTGCTCTAGCATATGGA 451450 || || || |||||| |||| |||||| Sbjct 267889 CCAACTGCTGCTGCTTTAGCCTATGGA 267915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975669721385684