Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq20 84.2 3e-11 seq19 84.2 3e-11 >seq20 Length=55201332 Score = 84.2 bits (92), Expect = 3e-11 Identities = 86/110 (78%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 117293 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCT 117352 ||||||||| | || || ||||| |||||| || || |||||||| |||| ||||| Sbjct 29494895 CCTCATCTCTGCTGATCAGCTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCCCTCTTCT 29494954 Query 117353 TCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCAC 117401 | | ||| |||||| ||| || ||||| ||||||||||| |||||||| Sbjct 29494955 TTAGCCAGAAAATAGAAGCAAAA-GACCCAGAGAAGAAGATTCCCTCCAC 29495003 >seq19 Length=48449771 Score = 84.2 bits (92), Expect = 3e-11 Identities = 86/110 (78%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 117293 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCT 117352 ||||||||| | || || ||||| |||||| || || |||||||| |||| ||||| Sbjct 47567303 CCTCATCTCTGCTGATCAGCTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCCCTCTTCT 47567362 Query 117353 TCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCAC 117401 | | ||| |||||| ||| || ||||| ||||||||||| |||||||| Sbjct 47567363 TTAGCCAGAAAATAGAAGCAAAA-GACCCAGAGAAGAAGATTCCCTCCAC 47567411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589966618336520