Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq20 105 8e-18 seq19 105 8e-18 seq1589 102 9e-17 >seq20 Length=55201332 Score = 105 bits (116), Expect = 8e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || |||| ||||| || || || | |||||||| ||||| || || | Sbjct 29494895 CCTCATCTCTGCTGATCAGCTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCCCTCTTCT 29494954 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 ||| |||||| ||||||||||| || ||||| ||||| || || || ||||| ||||| | Sbjct 29494955 TTAGCCAGAAAATAGAAGCAAAAGACCCAGAGAAGAAGATTCCCTCCACTGCAGCAAAGG 29495014 Query 19103 CAACTAGTCTTTCTCC 19118 | || | ||| || || Sbjct 29495015 CCACCACTCTCTCACC 29495030 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 19117 CCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACA 19176 ||||| | |||| |||| | |||||| || |||||||| ||||||||||| |||||| Sbjct 29495141 CCATATCGTGCATTTTTATCACCAATCCAGTTGAGTGCCCAGTCAGCCTTCTTCTTTACA 29495200 Query 19177 CATGGCATTGTCTCTATAGAATTAAATAGA 19206 |||||||||||||| || | ||| || ||| Sbjct 29495201 CATGGCATTGTCTCAATGGCATTGAACAGA 29495230 >seq19 Length=48449771 Score = 105 bits (116), Expect = 8e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || |||| ||||| || || || | |||||||| ||||| || || | Sbjct 47567303 CCTCATCTCTGCTGATCAGCTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCCCTCTTCT 47567362 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 ||| |||||| ||||||||||| || ||||| ||||| || || || ||||| ||||| | Sbjct 47567363 TTAGCCAGAAAATAGAAGCAAAAGACCCAGAGAAGAAGATTCCCTCCACTGCAGCAAAGG 47567422 Query 19103 CAACTAGTCTTTCTCC 19118 | || | ||| || || Sbjct 47567423 CCACCACTCTCTCACC 47567438 Score = 102 bits (112), Expect = 9e-17 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||||||||| || || | ||||| || | || | ||||||||||| |||||||| | Sbjct 32918980 CCTCGTCTCTGCTGATGAGCTCATTGGAGTAGGTGAGTCCAGGCATCAGGCCTCTTTTCT 32919039 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 ||||||| | || | |||||||||||| || || || || ||||| ||||||||||| | Sbjct 32919040 TTAACCAATAGATGGCAGCAAATGATCCTGAGAAAAAAATGCCTTCCACTGCTGCAAACG 32919099 Query 19103 CAAC 19106 | || Sbjct 32919100 CTAC 32919103 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 19461 TACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACG 19520 ||| || ||||||||||| |||||||||| ||||| ||| ||||| ||||| || || | Sbjct 32926981 TACCTCCTCAACTGTCCAGAAAGAAGCCTGTGCTTGTTTGTACATTTTCCAGATGTCTGG 32927040 Query 19521 ATATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTAAGAATAGGTTC 19574 ||| || ||||| || || ||||||| || ||| ||| | || | ||| || Sbjct 32927041 ATACTGAATAGGGAAAATGACAAATCGTTTGGGATTCTCTCTGAGCAGAGGCTC 32927094 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 19117 CCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACA 19176 ||||| | |||| |||| | |||||| || |||||||| ||||||||||| |||||| Sbjct 47567554 CCATATCGTGCATTTTTATCACCAATCCAGTTGAGTGCCCAGTCAGCCTTCTTCTTTACA 47567613 Query 19177 CATGGCATTGTCTCTATAGAATTAAA 19202 |||||||||||||| || | ||| || Sbjct 47567614 CATGGCATTGTCTCAATGGCATTGAA 47567639 >seq1589 Length=338889 Score = 102 bits (112), Expect = 9e-17 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||||||||| || || | ||||| || | || | ||||||||||| |||||||| | Sbjct 55630 CCTCGTCTCTGCTGATGAGCTCATTGGAGTAGGTGAGTCCAGGCATCAGGCCTCTTTTCT 55689 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 ||||||| | || | |||||||||||| || || || || ||||| ||||||||||| | Sbjct 55690 TTAACCAATAGATGGCAGCAAATGATCCTGAGAAAAAAATGCCTTCCACTGCTGCAAACG 55749 Query 19103 CAAC 19106 | || Sbjct 55750 CTAC 55753 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 19461 TACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACG 19520 ||| || ||||||||||| |||||||||| ||||| ||| ||||| ||||| || || | Sbjct 63631 TACCTCCTCAACTGTCCAGAAAGAAGCCTGTGCTTGTTTGTACATTTTCCAGATGTCTGG 63690 Query 19521 ATATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTAAGAATAGGTTC 19574 ||| || ||||| || || ||||||| || ||| ||| | || | ||| || Sbjct 63691 ATACTGAATAGGGAAAATGACAAATCGTTTGGGATTCTCTCTGAGCAGAGGCTC 63744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562095288309720