Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq1589 91.5 2e-13 seq19 91.5 2e-13 >seq1589 Length=338889 Score = 91.5 bits (100), Expect = 2e-13 Identities = 97/127 (76%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 37195 AACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCttt 37254 ||||| | ||||| || || | ||||| || |||| | ||| ||||| | ||||||| Sbjct 55628 AACCT-CGTCTCTGCTGATGAGCTCATTGGAGTAGGTGAGTCCAGGCATCAGGCCTCTTT 55686 Query 37255 ttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAA 37314 | || | |||| | || || ||||| ||||| || || ||||| ||||| |||||||||| Sbjct 55687 TCTTTAACCAATAGATGGCAGCAAATGATCCTGAGAAAAAAATGCCTTCCACTGCTGCAA 55746 Query 37315 ATGCTAC 37321 | ||||| Sbjct 55747 ACGCTAC 55753 >seq19 Length=48449771 Score = 91.5 bits (100), Expect = 2e-13 Identities = 97/127 (76%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 37195 AACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCttt 37254 ||||| | ||||| || || | ||||| || |||| | ||| ||||| | ||||||| Sbjct 32918978 AACCT-CGTCTCTGCTGATGAGCTCATTGGAGTAGGTGAGTCCAGGCATCAGGCCTCTTT 32919036 Query 37255 ttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAA 37314 | || | |||| | || || ||||| ||||| || || ||||| ||||| |||||||||| Sbjct 32919037 TCTTTAACCAATAGATGGCAGCAAATGATCCTGAGAAAAAAATGCCTTCCACTGCTGCAA 32919096 Query 37315 ATGCTAC 37321 | ||||| Sbjct 32919097 ACGCTAC 32919103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592302562184920