Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq7 125 6e-24 >seq7 Length=74282399 Score = 125 bits (138), Expect = 6e-24 Identities = 126/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| ||| || |||||||| || || || | ||||||||||||||| || || Sbjct 71539815 AGTCCAGTGATGTGGGCGATCATGTAGGTCAGCAGGGCGTAGCTGGCGATGTTGAATGGG 71539756 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || ||||| || ||||| ||||| | |||||| |||||||| || | ||| |||| | Sbjct 71539755 ACACCGAGACCGATGTCTCCCGATCGCTGGTACAGCTGACATGACAACTCACCGTTCGAC 71539696 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 |||||||||||||||| | || || || || || ||||| || Sbjct 71539695 ACGTAAAACTGACACAACGCATGACAGGGCGGCAGCGCCATCAG 71539652 Score = 123 bits (136), Expect = 2e-23 Identities = 132/173 (76%), Gaps = 1/173 (1%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || |||| || ||||| |||||||||||||| || || || || || ||||| || Sbjct 71536957 CATATCTTTGTATTCGGCTCCAAAATGCCTCCACTGAAATCCATAAACTGGACCCAGATC 71536898 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 ||| || |||| | ||| || |||| |||| ||| |||||||| ||||| || || Sbjct 71536897 TCCTTCCTCCCGATCGGTGAATCCGTTCTTATCCAGAAACTCTCTGGAGCCGTTAGCATC 71536838 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 30322 ||| ||| | || |||||||| || || ||||||| |||||| || || |||| Sbjct 71536837 CCAAATCCTCACACCCTTCTCCGACAGATCTTTGGCGTTTGTTGAACC-CTGA 71536786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408608023408079