Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq3 297 4e-75 seq1 224 2e-53 seq5 156 8e-33 seq2 113 8e-20 seq20 111 3e-19 seq19 111 3e-19 seq21 91.5 3e-13 >seq3 Length=62628489 Score = 297 bits (328), Expect = 4e-75 Identities = 212/244 (87%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 241389 GCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCC 241448 |||||||||| | |||||||| |||||||| ||| |||||||| |||||||| |||| Sbjct 7654873 GCTGACAGCCGCTGTTCATGTGCCTCAGGACCTTCTGCTTGAGTTGCGCCACCTGTTCCC 7654932 Query 241449 GCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCT 241508 ||||||| ||||| || ||||||||||| |||||||| ||||| || ||||||||||| | Sbjct 7654933 GCAGAACAGACGCTGTGTTGGACAGTCCGGCGTTGTCGGACTTCAGTACCTTCACTTTTT 7654992 Query 241509 CCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGT 241568 |||||||||||||||||||||| |||||||||| |||||||||||||| |||| |||| Sbjct 7654993 CCTCCAGCCGCGCGATGCGTTCTAGTTTGCGCCTTCGGCATTTGGTGGCCGCCAGTCGGT 7655052 Query 241569 TCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGACT 241628 ||||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||| Sbjct 7655053 TCCGGAGCCTCTTGCGTTCCGCCTTGATGCGTTCCTGCGAGTCCATGTCGATCGGGGACA 7655112 Query 241629 TGGG 241632 |||| Sbjct 7655113 TGGG 7655116 Score = 102 bits (112), Expect = 2e-16 Identities = 91/115 (79%), Gaps = 8/115 (7%) Strand=Plus/Plus Query 238926 TCTGTTTGAGTTGGGCCACCCGGTCCCGCAGAACGGACGCGGTATTGGACAGACCCGCGT 238985 |||| |||||||| |||||| | ||||||||||| ||||| || |||||||| || |||| Sbjct 7654906 TCTGCTTGAGTTGCGCCACCTGTTCCCGCAGAACAGACGCTGTGTTGGACAGTCCGGCGT 7654965 Query 238986 TATCAGACTTGAG--------CATTCTCCTCCAGCCGCGCGATGCGTTCCAGCTT 239032 | || ||||| || | || ||||||||||||||||||||||| || || Sbjct 7654966 TGTCGGACTTCAGTACCTTCACTTTTTCCTCCAGCCGCGCGATGCGTTCTAGTTT 7655020 >seq1 Length=59578282 Score = 224 bits (248), Expect = 2e-53 Identities = 181/219 (83%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 241414 CAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAG 241473 || ||||| ||| || || || || ||||| |||| ||| | |||||| || ||||||| Sbjct 51733385 CATGACCTTCTGCTTAAGCTGAGCTACCTGCTCCCTCAGCAGGGACGCAGTGCTGGACAG 51733444 Query 241474 TCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAG 241533 ||| ||||| || ||||||||||| |||||||| ||||||||||| | |||||| ||||| Sbjct 51733445 TCCGGCGTTATCCGACTTGAGCACTTTCACTTTGTCCTCCAGCCGGGAGATGCGCTCCAG 51733504 Query 241534 TTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTT 241593 || || || ||||| |||||||| |||| ||||||||||| ||||| || ||||| || Sbjct 51733505 CTTCCGTCGCCGGCACTTGGTGGCCGCCAGTCGGTTCCGGAGCCTCTTGCGCTCCGCTTT 51733564 Query 241594 GATGCGTTCCTGGTCCTCCATGTCGATCGGAGACTTGGG 241632 |||||| |||||||||||||||||||| || ||| |||| Sbjct 51733565 GATGCGCTCCTGGTCCTCCATGTCGATGGGCGACATGGG 51733603 Score = 84.2 bits (92), Expect = 4e-11 Identities = 87/115 (76%), Gaps = 8/115 (7%) Strand=Plus/Plus Query 238926 TCTGTTTGAGTTGGGCCACCCGGTCCCGCAGAACGGACGCGGTATTGGACAGACCCGCGT 238985 |||| || || || || ||| | |||| ||| | |||||| || ||||||| || |||| Sbjct 51733393 TCTGCTTAAGCTGAGCTACCTGCTCCCTCAGCAGGGACGCAGTGCTGGACAGTCCGGCGT 51733452 Query 238986 TATCAGACTTGAGCA--------TTCTCCTCCAGCCGCGCGATGCGTTCCAGCTT 239032 |||| |||||||||| || ||||||||||| | |||||| |||||||| Sbjct 51733453 TATCCGACTTGAGCACTTTCACTTTGTCCTCCAGCCGGGAGATGCGCTCCAGCTT 51733507 >seq5 Length=72500376 Score = 156 bits (172), Expect = 8e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 241418 ACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGTCCT 241477 |||| ||| ||||| || |||||||| |||| ||| | | ||||| || ||| | Sbjct 394702 ACCTTCTGCTTGAGCTGCGCCACCTGCTCCCTCAGGATGCCGGCGGTGGAGGCCAGGTCG 394643 Query 241478 GCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTG 241537 | ||| | | ||| ||||||||||| |||||||||||||| | |||||| ||||||||| Sbjct 394642 GAGTTCTGCGTCTTCAGCACCTTCACCTTCTCCTCCAGCCGAGAGATGCGCTCCAGTTTG 394583 Query 241538 CGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATG 241597 ||| |||||| |||| || || | ||||||||| || ||||||| |||||||||||| Sbjct 394582 CGCTTGCGGCACTTGGATGCGGCGATGCGGTTCCGCAGCTTCTTACGCTCCGCCTTGATG 394523 Query 241598 CGTTCCTGGTCCTCCATGTCGATCGGAGA 241626 || ||||| ||| | ||| || || || Sbjct 394522 CGCTCCTGCGTCTCTAGGTCAATAGGTGA 394494 >seq2 Length=59640629 Score = 113 bits (124), Expect = 8e-20 Identities = 151/207 (73%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 241423 CTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACA-GTCCTGCGT 241481 ||| || || || |||||||| |||| ||| ||| ||||| |||| | || ||| Sbjct 56130378 CTGCTTCAGCTGCGCCACCTGCTCCCTCAGCACGCTGGCGGT---GGACGCGAGCTCCGT 56130434 Query 241482 TGTCAGACT--TGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCG 241539 || | || | || ||||||||| |||||||| || | || || |||||||| || Sbjct 56130435 GTTCTGGCTCTTCAGGGACTTCACTTTGTCCTCCAGGCGGGAAATCCGCTCCAGTTTCCG 56130494 Query 241540 CCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCG 241599 | ||||||||||| ||| || | |||||||||||| |||| | || || |||||||| Sbjct 56130495 CTTGCGGCATTTGGAGGCGGCGATGCGGTTCCGGAGCTTCTTCCTCTCGGCTTTGATGCG 56130554 Query 241600 TTCCTGGTCCTCCATGTCGATCGGAGA 241626 ||||| ||||||||||| || || Sbjct 56130555 CTCCTGCGTGTCCATGTCGATGGGGGA 56130581 >seq20 Length=55201332 Score = 111 bits (122), Expect = 3e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 || || | |||||| ||| | ||||||||| ||| |||||||||| ||||||| || Sbjct 29494897 TCATCTCTGCTGATCAGCTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCCCTCTTCTTT 29494956 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 ||||||||||| | || ||||| |||||||||||||| ||||||||||| || || || Sbjct 29494957 AGCCAGAAAATAGAAGCAAAAGACCCAGAGAAGAAGATTCCCTCCACTGCAGCAAAGGC 29495015 Score = 86.0 bits (94), Expect = 1e-11 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || ||||||| ||||| |||||||| ||||| ||||||||||| |||||||| Sbjct 29493256 CTGGTACTCGCCCACTCGCTTCTCGAAGAAGTTGGTCTTGCCCTCCAACGAAATGTTCTC 29493315 Query 47899 CATGAAG 47905 ||||||| Sbjct 29493316 CATGAAG 29493322 Score = 84.2 bits (92), Expect = 4e-11 Identities = 149/216 (69%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 241414 CAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGAC-- 241471 || ||| | ||| ||||| || ||||| || || ||||| | | ||||| |||| Sbjct 15553885 CATGACTTTCTGCTTGAGCTGTGCCACTTGCTCGCGCAGCATGTTGGCGGT---GGACGC 15553829 Query 241472 -AGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTC 241530 || | | ||| | ||||| || ||| ||||| ||||||||||| | ||| | || Sbjct 15553828 GAGCTCCGAGTTTTGCGACTTCAGGGTCTTGACTTTGTCCTCCAGCCGGGAGATCCTCTC 15553769 Query 241531 CAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGC 241590 |||||| | | |||||||||| || || | | ||| | | | ||| | || || Sbjct 15553768 CAGTTTCCTCTTCCGGCATTTGGACGCGGCGATTCTGTTTCTCATGCGCTTCCTCTCGGC 15553709 Query 241591 CTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGA 241626 || || || |||||| |||||||||||| ||||| Sbjct 15553708 TTTAATCCGCTCCTGGCTCTCCATGTCGATAGGAGA 15553673 >seq19 Length=48449771 Score = 111 bits (122), Expect = 3e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 || || | |||||| ||| | ||||||||| ||| |||||||||| ||||||| || Sbjct 47567305 TCATCTCTGCTGATCAGCTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCCCTCTTCTTT 47567364 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 ||||||||||| | || ||||| |||||||||||||| ||||||||||| || || || Sbjct 47567365 AGCCAGAAAATAGAAGCAAAAGACCCAGAGAAGAAGATTCCCTCCACTGCAGCAAAGGC 47567423 Score = 86.0 bits (94), Expect = 1e-11 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || ||||||| ||||| |||||||| ||||| ||||||||||| |||||||| Sbjct 47565676 CTGGTACTCGCCCACTCGCTTCTCGAAGAAGTTGGTCTTGCCCTCCAACGAAATGTTCTC 47565735 Query 47899 CATGAAG 47905 ||||||| Sbjct 47565736 CATGAAG 47565742 >seq21 Length=45934066 Score = 91.5 bits (100), Expect = 3e-13 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||| | ||||| ||||||| ||||||||| |||||||||||||||||| ||| Sbjct 30778854 GTGTACTCAACAATCTCTGTGCACAAATTGCTGCATTTGATGGTGCCCAGGTTCTGCTGG 30778913 Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTC 213640 ||| ||||| | ||| | || ||||| |||||||| || | |||||||| Sbjct 30778914 -TTGCTCTTGCGGTTGCAGGCGTCTTTGTAAAGCATGTATGGTGTGCCGGTCTC 30778966 Score = 84.2 bits (92), Expect = 4e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 212918 CTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCT 212977 ||| || || || || || ||||| | ||| | ||| ||||| ||||| ||| Sbjct 30773343 CTGAAACTCTCCAGACAGGACCCTGCGGGTGTAGATGTTGCTGGTGTACGGCTCAATGGA 30773402 Query 212978 CTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACT 213037 |||||||| ||||||||||| || ||| ||| |||||||| || |||| ||| ||||| Sbjct 30773403 TTCGTTGTTGCCCAGAATCTGAGCTGTGGAGGCAGTGGGCATTGGGGCCAGCAGCAGACT 30773462 Query 213038 GTTCCTCACTCCGTGC 213053 ||| | ||| || ||| Sbjct 30773463 GTTACGCACCCCATGC 30773478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931510408280320